miRNA display CGI


Results 1 - 20 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33327 3' -61.3 NC_007605.1 + 22034 0.73 0.354415
Target:  5'- aCCaGGGAcCucGGGCacCCCAGAGCCCCu -3'
miRNA:   3'- -GG-CCCUcGuuCUCGc-GGGUCUCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 40246 0.74 0.298097
Target:  5'- uCCaGGGGGCAGccGCgGCCCAGcgcGCCCCg -3'
miRNA:   3'- -GG-CCCUCGUUcuCG-CGGGUCu--CGGGG- -5'
33327 3' -61.3 NC_007605.1 + 116169 0.73 0.330307
Target:  5'- gCCGGGAuGUGAGgccucAGCGCCCccuccugaucaaagAGGGCCUCg -3'
miRNA:   3'- -GGCCCU-CGUUC-----UCGCGGG--------------UCUCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 39969 0.73 0.339658
Target:  5'- gCUGGGGGCuGGGGU-CCCGGGacGCCCCc -3'
miRNA:   3'- -GGCCCUCGuUCUCGcGGGUCU--CGGGG- -5'
33327 3' -61.3 NC_007605.1 + 153897 0.73 0.34698
Target:  5'- cUCGGG-GUugAGGGGCGCCCAGGcGUCCg -3'
miRNA:   3'- -GGCCCuCG--UUCUCGCGGGUCU-CGGGg -5'
33327 3' -61.3 NC_007605.1 + 38912 0.73 0.354415
Target:  5'- uCCGGGGGCAGcGGGCGgCCGccgguGGGUCCg -3'
miRNA:   3'- -GGCCCUCGUU-CUCGCgGGU-----CUCGGGg -5'
33327 3' -61.3 NC_007605.1 + 12828 0.73 0.354415
Target:  5'- aCCaGGGAcCucGGGCacCCCAGAGCCCCu -3'
miRNA:   3'- -GG-CCCUcGuuCUCGc-GGGUCUCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 15897 0.73 0.354415
Target:  5'- aCCaGGGAcCucGGGCacCCCAGAGCCCCu -3'
miRNA:   3'- -GG-CCCUcGuuCUCGc-GGGUCUCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 18965 0.73 0.354415
Target:  5'- aCCaGGGAcCucGGGCacCCCAGAGCCCCu -3'
miRNA:   3'- -GG-CCCUcGuuCUCGc-GGGUCUCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 171435 0.74 0.298097
Target:  5'- gCgGGGAGCGggcaauGGAGCGUgacgaAGGGCCCCa -3'
miRNA:   3'- -GgCCCUCGU------UCUCGCGgg---UCUCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 170897 0.74 0.298097
Target:  5'- gCgGGGAGCGggcaauGGAGCGUgacgaAGGGCCCCa -3'
miRNA:   3'- -GgCCCUCGU------UCUCGCGgg---UCUCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 170375 0.74 0.298097
Target:  5'- gCgGGGAGCGggcaauGGAGCGUgacgaAGGGCCCCa -3'
miRNA:   3'- -GgCCCUCGU------UCUCGCGgg---UCUCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 58555 0.75 0.254723
Target:  5'- uCUGacauGGGCGGGGGUGCCCGGGGCCgCa -3'
miRNA:   3'- -GGCc---CUCGUUCUCGCGGGUCUCGGgG- -5'
33327 3' -61.3 NC_007605.1 + 96854 0.75 0.260588
Target:  5'- cCCGGGAGCGauAGAGC----AGGGCCCCg -3'
miRNA:   3'- -GGCCCUCGU--UCUCGcgggUCUCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 74176 0.75 0.266561
Target:  5'- aCGaGGGGCGuGAGCgaGCgCAGGGCCCCc -3'
miRNA:   3'- gGC-CCUCGUuCUCG--CGgGUCUCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 101737 0.75 0.266561
Target:  5'- uCCGGGAGUuguuGGAcgcgGCGCcuagCCAGGGUCCCu -3'
miRNA:   3'- -GGCCCUCGu---UCU----CGCG----GGUCUCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 135531 0.74 0.278841
Target:  5'- gCGGcuucguGGAGCGCCCGGAcGCCCCa -3'
miRNA:   3'- gGCCcucgu-UCUCGCGGGUCU-CGGGG- -5'
33327 3' -61.3 NC_007605.1 + 126204 0.74 0.285147
Target:  5'- aCGaGGAGUcuGAGCGUCgAGAcGCCCCu -3'
miRNA:   3'- gGC-CCUCGuuCUCGCGGgUCU-CGGGG- -5'
33327 3' -61.3 NC_007605.1 + 164704 0.74 0.289628
Target:  5'- uCCGGcGGCGAGGGCGCgacccacgccucgaCCGGGGUCCUc -3'
miRNA:   3'- -GGCCcUCGUUCUCGCG--------------GGUCUCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 169837 0.74 0.298097
Target:  5'- gCgGGGAGCGggcaauGGAGCGUgacgaAGGGCCCCa -3'
miRNA:   3'- -GgCCCUCGU------UCUCGCGgg---UCUCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.