miRNA display CGI


Results 1 - 20 of 436 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33327 3' -61.3 NC_007605.1 + 71551 1.13 0.00061
Target:  5'- cCCGGGAGCAAGAGCGCCCAGAGCCCCa -3'
miRNA:   3'- -GGCCCUCGUUCUCGCGGGUCUCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 55022 0.79 0.147661
Target:  5'- gCUGGGGGCA----CGCCCAGAGCCCg -3'
miRNA:   3'- -GGCCCUCGUucucGCGGGUCUCGGGg -5'
33327 3' -61.3 NC_007605.1 + 40181 0.78 0.162762
Target:  5'- gUGGGAGCAgggagGGGGCGuCCCGGGaCCCCa -3'
miRNA:   3'- gGCCCUCGU-----UCUCGC-GGGUCUcGGGG- -5'
33327 3' -61.3 NC_007605.1 + 31445 0.77 0.197179
Target:  5'- cCCGaGGGGCucuGGGGUGCCCGaGGUCCCu -3'
miRNA:   3'- -GGC-CCUCGu--UCUCGCGGGUcUCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 13032 0.77 0.197179
Target:  5'- cCCGaGGGGCucuGGGGUGCCCGaGGUCCCu -3'
miRNA:   3'- -GGC-CCUCGu--UCUCGCGGGUcUCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 22238 0.77 0.197179
Target:  5'- cCCGaGGGGCucuGGGGUGCCCGaGGUCCCu -3'
miRNA:   3'- -GGC-CCUCGu--UCUCGCGGGUcUCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 25307 0.77 0.197179
Target:  5'- cCCGaGGGGCucuGGGGUGCCCGaGGUCCCu -3'
miRNA:   3'- -GGC-CCUCGu--UCUCGCGGGUcUCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 28376 0.77 0.197179
Target:  5'- cCCGaGGGGCucuGGGGUGCCCGaGGUCCCu -3'
miRNA:   3'- -GGC-CCUCGu--UCUCGCGGGUcUCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 34514 0.77 0.197179
Target:  5'- cCCGaGGGGCucuGGGGUGCCCGaGGUCCCu -3'
miRNA:   3'- -GGC-CCUCGu--UCUCGCGGGUcUCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 16101 0.77 0.197179
Target:  5'- cCCGaGGGGCucuGGGGUGCCCGaGGUCCCu -3'
miRNA:   3'- -GGC-CCUCGu--UCUCGCGGGUcUCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 19169 0.77 0.197179
Target:  5'- cCCGaGGGGCucuGGGGUGCCCGaGGUCCCu -3'
miRNA:   3'- -GGC-CCUCGu--UCUCGCGGGUcUCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 55742 0.77 0.201903
Target:  5'- gCGGGAGagauGGGGGCGCCUGGGGCCg- -3'
miRNA:   3'- gGCCCUCg---UUCUCGCGGGUCUCGGgg -5'
33327 3' -61.3 NC_007605.1 + 58555 0.75 0.254723
Target:  5'- uCUGacauGGGCGGGGGUGCCCGGGGCCgCa -3'
miRNA:   3'- -GGCc---CUCGUUCUCGCGGGUCUCGGgG- -5'
33327 3' -61.3 NC_007605.1 + 96854 0.75 0.260588
Target:  5'- cCCGGGAGCGauAGAGC----AGGGCCCCg -3'
miRNA:   3'- -GGCCCUCGU--UCUCGcgggUCUCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 54674 0.75 0.266561
Target:  5'- gCGaGGAGCGgaGGaAGCGgCCGGGGCCCUc -3'
miRNA:   3'- gGC-CCUCGU--UC-UCGCgGGUCUCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 101737 0.75 0.266561
Target:  5'- uCCGGGAGUuguuGGAcgcgGCGCcuagCCAGGGUCCCu -3'
miRNA:   3'- -GGCCCUCGu---UCU----CGCG----GGUCUCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 74176 0.75 0.266561
Target:  5'- aCGaGGGGCGuGAGCgaGCgCAGGGCCCCc -3'
miRNA:   3'- gGC-CCUCGUuCUCG--CGgGUCUCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 31707 0.75 0.272645
Target:  5'- -gGGGAGgAgaGGGGaCGCCUAGGGUCCCu -3'
miRNA:   3'- ggCCCUCgU--UCUC-GCGGGUCUCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 28638 0.75 0.272645
Target:  5'- -gGGGAGgAgaGGGGaCGCCUAGGGUCCCu -3'
miRNA:   3'- ggCCCUCgU--UCUC-GCGGGUCUCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 34776 0.75 0.272645
Target:  5'- -gGGGAGgAgaGGGGaCGCCUAGGGUCCCu -3'
miRNA:   3'- ggCCCUCgU--UCUC-GCGGGUCUCGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.