Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33327 | 5' | -58.3 | NC_007605.1 | + | 31541 | 0.68 | 0.707737 |
Target: 5'- -uGGG-GCCUGG-GCcCCGAGGguggCUCc -3' miRNA: 3'- guCCCaCGGAUCuCGuGGCUCCa---GAG- -5' |
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33327 | 5' | -58.3 | NC_007605.1 | + | 34305 | 0.67 | 0.756084 |
Target: 5'- gGGGG-GCUgAGGGCgACCGuccgggcccggaGGGUCUCa -3' miRNA: 3'- gUCCCaCGGaUCUCG-UGGC------------UCCAGAG- -5' |
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33327 | 5' | -58.3 | NC_007605.1 | + | 34533 | 0.72 | 0.471039 |
Target: 5'- gAGGGcGCCUGGAgGCGggcCCGAGGggCUCu -3' miRNA: 3'- gUCCCaCGGAUCU-CGU---GGCUCCa-GAG- -5' |
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33327 | 5' | -58.3 | NC_007605.1 | + | 34610 | 0.68 | 0.707737 |
Target: 5'- -uGGG-GCCUGG-GCcCCGAGGguggCUCc -3' miRNA: 3'- guCCCaCGGAUCuCGuGGCUCCa---GAG- -5' |
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33327 | 5' | -58.3 | NC_007605.1 | + | 41290 | 0.67 | 0.746592 |
Target: 5'- gCGGGGUGCCacgucaccccGGGGUGCUGGGGUgggggaugggCUCa -3' miRNA: 3'- -GUCCCACGGa---------UCUCGUGGCUCCA----------GAG- -5' |
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33327 | 5' | -58.3 | NC_007605.1 | + | 45074 | 0.7 | 0.605401 |
Target: 5'- aAGGGUGuCCUuggcguccggguGGGCcCCGAGGcUCUCg -3' miRNA: 3'- gUCCCAC-GGAu-----------CUCGuGGCUCC-AGAG- -5' |
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33327 | 5' | -58.3 | NC_007605.1 | + | 48003 | 0.67 | 0.774739 |
Target: 5'- -cGGGccgugGCCaGGGGuUACCGAGGcCUCg -3' miRNA: 3'- guCCCa----CGGaUCUC-GUGGCUCCaGAG- -5' |
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33327 | 5' | -58.3 | NC_007605.1 | + | 53572 | 0.67 | 0.783886 |
Target: 5'- cCAGGG-GCCUGGcGC-UUGGGGcCUCg -3' miRNA: 3'- -GUCCCaCGGAUCuCGuGGCUCCaGAG- -5' |
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33327 | 5' | -58.3 | NC_007605.1 | + | 61247 | 0.68 | 0.687901 |
Target: 5'- aCAGGGgaggGCC-GGAGCcgggGCCGGGGcCUg -3' miRNA: 3'- -GUCCCa---CGGaUCUCG----UGGCUCCaGAg -5' |
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33327 | 5' | -58.3 | NC_007605.1 | + | 61467 | 0.66 | 0.835693 |
Target: 5'- gAGGG-GCCgcUGGuGCGCCG-GG-CUCg -3' miRNA: 3'- gUCCCaCGG--AUCuCGUGGCuCCaGAG- -5' |
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33327 | 5' | -58.3 | NC_007605.1 | + | 64848 | 0.66 | 0.819063 |
Target: 5'- --aGGUGCCUauAGAGgGCCuGGGUCa- -3' miRNA: 3'- gucCCACGGA--UCUCgUGGcUCCAGag -5' |
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33327 | 5' | -58.3 | NC_007605.1 | + | 65525 | 0.66 | 0.835693 |
Target: 5'- uCGGGGUGC--AGGGCcugGCCGAuGUCUUu -3' miRNA: 3'- -GUCCCACGgaUCUCG---UGGCUcCAGAG- -5' |
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33327 | 5' | -58.3 | NC_007605.1 | + | 71516 | 1.08 | 0.002117 |
Target: 5'- cCAGGGUGCCUAGAGCACCGAGGUCUCc -3' miRNA: 3'- -GUCCCACGGAUCUCGUGGCUCCAGAG- -5' |
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33327 | 5' | -58.3 | NC_007605.1 | + | 75043 | 0.66 | 0.843741 |
Target: 5'- --cGGUGCCUGGGcGCaagagaucucgGCCGuuGUCUCa -3' miRNA: 3'- gucCCACGGAUCU-CG-----------UGGCucCAGAG- -5' |
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33327 | 5' | -58.3 | NC_007605.1 | + | 82592 | 0.7 | 0.607414 |
Target: 5'- gAGGGUgGCCaGGAuGcCACCGAGGUuCUUg -3' miRNA: 3'- gUCCCA-CGGaUCU-C-GUGGCUCCA-GAG- -5' |
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33327 | 5' | -58.3 | NC_007605.1 | + | 91325 | 0.71 | 0.567355 |
Target: 5'- cCGGGucaaGUGgCUGGGGCACCGGGG-CUg -3' miRNA: 3'- -GUCC----CACgGAUCUCGUGGCUCCaGAg -5' |
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33327 | 5' | -58.3 | NC_007605.1 | + | 92128 | 0.68 | 0.727324 |
Target: 5'- gGGGGUGCCUcucaCACCGAGGcccgcuaCUCg -3' miRNA: 3'- gUCCCACGGAucucGUGGCUCCa------GAG- -5' |
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33327 | 5' | -58.3 | NC_007605.1 | + | 104393 | 0.67 | 0.746592 |
Target: 5'- -uGGGUGaCCUGGccaGGCAccccaucuuccCCGAGGUCa- -3' miRNA: 3'- guCCCAC-GGAUC---UCGU-----------GGCUCCAGag -5' |
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33327 | 5' | -58.3 | NC_007605.1 | + | 107370 | 0.67 | 0.7929 |
Target: 5'- uGGGGUGCCUugcccuGGAGaCGCU--GGUCUUc -3' miRNA: 3'- gUCCCACGGA------UCUC-GUGGcuCCAGAG- -5' |
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33327 | 5' | -58.3 | NC_007605.1 | + | 115283 | 0.73 | 0.434849 |
Target: 5'- gGGuGGUGCUUGGA-CACaGAGGUCUCa -3' miRNA: 3'- gUC-CCACGGAUCUcGUGgCUCCAGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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