miRNA display CGI


Results 1 - 20 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33327 5' -58.3 NC_007605.1 + 12823 0.67 0.756084
Target:  5'- gGGGG-GCUgAGGGCgACCGuccgggcccggaGGGUCUCa -3'
miRNA:   3'- gUCCCaCGGaUCUCG-UGGC------------UCCAGAG- -5'
33327 5' -58.3 NC_007605.1 + 13051 0.72 0.471039
Target:  5'- gAGGGcGCCUGGAgGCGggcCCGAGGggCUCu -3'
miRNA:   3'- gUCCCaCGGAUCU-CGU---GGCUCCa-GAG- -5'
33327 5' -58.3 NC_007605.1 + 13128 0.68 0.707737
Target:  5'- -uGGG-GCCUGG-GCcCCGAGGguggCUCc -3'
miRNA:   3'- guCCCaCGGAUCuCGuGGCUCCa---GAG- -5'
33327 5' -58.3 NC_007605.1 + 15892 0.67 0.756084
Target:  5'- gGGGG-GCUgAGGGCgACCGuccgggcccggaGGGUCUCa -3'
miRNA:   3'- gUCCCaCGGaUCUCG-UGGC------------UCCAGAG- -5'
33327 5' -58.3 NC_007605.1 + 16120 0.72 0.471039
Target:  5'- gAGGGcGCCUGGAgGCGggcCCGAGGggCUCu -3'
miRNA:   3'- gUCCCaCGGAUCU-CGU---GGCUCCa-GAG- -5'
33327 5' -58.3 NC_007605.1 + 16196 0.68 0.707737
Target:  5'- -uGGG-GCCUGG-GCcCCGAGGguggCUCc -3'
miRNA:   3'- guCCCaCGGAUCuCGuGGCUCCa---GAG- -5'
33327 5' -58.3 NC_007605.1 + 18961 0.67 0.756084
Target:  5'- gGGGG-GCUgAGGGCgACCGuccgggcccggaGGGUCUCa -3'
miRNA:   3'- gUCCCaCGGaUCUCG-UGGC------------UCCAGAG- -5'
33327 5' -58.3 NC_007605.1 + 19188 0.72 0.471039
Target:  5'- gAGGGcGCCUGGAgGCGggcCCGAGGggCUCu -3'
miRNA:   3'- gUCCCaCGGAUCU-CGU---GGCUCCa-GAG- -5'
33327 5' -58.3 NC_007605.1 + 19265 0.68 0.707737
Target:  5'- -uGGG-GCCUGG-GCcCCGAGGguggCUCc -3'
miRNA:   3'- guCCCaCGGAUCuCGuGGCUCCa---GAG- -5'
33327 5' -58.3 NC_007605.1 + 22030 0.67 0.756084
Target:  5'- gGGGG-GCUgAGGGCgACCGuccgggcccggaGGGUCUCa -3'
miRNA:   3'- gUCCCaCGGaUCUCG-UGGC------------UCCAGAG- -5'
33327 5' -58.3 NC_007605.1 + 22257 0.72 0.471039
Target:  5'- gAGGGcGCCUGGAgGCGggcCCGAGGggCUCu -3'
miRNA:   3'- gUCCCaCGGAUCU-CGU---GGCUCCa-GAG- -5'
33327 5' -58.3 NC_007605.1 + 22334 0.68 0.707737
Target:  5'- -uGGG-GCCUGG-GCcCCGAGGguggCUCc -3'
miRNA:   3'- guCCCaCGGAUCuCGuGGCUCCa---GAG- -5'
33327 5' -58.3 NC_007605.1 + 25099 0.67 0.756084
Target:  5'- gGGGG-GCUgAGGGCgACCGuccgggcccggaGGGUCUCa -3'
miRNA:   3'- gUCCCaCGGaUCUCG-UGGC------------UCCAGAG- -5'
33327 5' -58.3 NC_007605.1 + 25326 0.72 0.471039
Target:  5'- gAGGGcGCCUGGAgGCGggcCCGAGGggCUCu -3'
miRNA:   3'- gUCCCaCGGAUCU-CGU---GGCUCCa-GAG- -5'
33327 5' -58.3 NC_007605.1 + 25403 0.68 0.707737
Target:  5'- -uGGG-GCCUGG-GCcCCGAGGguggCUCc -3'
miRNA:   3'- guCCCaCGGAUCuCGuGGCUCCa---GAG- -5'
33327 5' -58.3 NC_007605.1 + 28167 0.67 0.756084
Target:  5'- gGGGG-GCUgAGGGCgACCGuccgggcccggaGGGUCUCa -3'
miRNA:   3'- gUCCCaCGGaUCUCG-UGGC------------UCCAGAG- -5'
33327 5' -58.3 NC_007605.1 + 28395 0.72 0.471039
Target:  5'- gAGGGcGCCUGGAgGCGggcCCGAGGggCUCu -3'
miRNA:   3'- gUCCCaCGGAUCU-CGU---GGCUCCa-GAG- -5'
33327 5' -58.3 NC_007605.1 + 28472 0.68 0.707737
Target:  5'- -uGGG-GCCUGG-GCcCCGAGGguggCUCc -3'
miRNA:   3'- guCCCaCGGAUCuCGuGGCUCCa---GAG- -5'
33327 5' -58.3 NC_007605.1 + 31236 0.67 0.756084
Target:  5'- gGGGG-GCUgAGGGCgACCGuccgggcccggaGGGUCUCa -3'
miRNA:   3'- gUCCCaCGGaUCUCG-UGGC------------UCCAGAG- -5'
33327 5' -58.3 NC_007605.1 + 31464 0.72 0.471039
Target:  5'- gAGGGcGCCUGGAgGCGggcCCGAGGggCUCu -3'
miRNA:   3'- gUCCCaCGGAUCU-CGU---GGCUCCa-GAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.