Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33327 | 5' | -58.3 | NC_007605.1 | + | 65525 | 0.66 | 0.835693 |
Target: 5'- uCGGGGUGC--AGGGCcugGCCGAuGUCUUu -3' miRNA: 3'- -GUCCCACGgaUCUCG---UGGCUcCAGAG- -5' |
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33327 | 5' | -58.3 | NC_007605.1 | + | 126008 | 0.66 | 0.835693 |
Target: 5'- cCGGaGGUGuCCgUGGGGCACCagGAGcuGUCUCc -3' miRNA: 3'- -GUC-CCAC-GG-AUCUCGUGG--CUC--CAGAG- -5' |
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33327 | 5' | -58.3 | NC_007605.1 | + | 61467 | 0.66 | 0.835693 |
Target: 5'- gAGGG-GCCgcUGGuGCGCCG-GG-CUCg -3' miRNA: 3'- gUCCCaCGG--AUCuCGUGGCuCCaGAG- -5' |
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33327 | 5' | -58.3 | NC_007605.1 | + | 141710 | 0.66 | 0.843741 |
Target: 5'- gGGGGUGCCggcuGCAgCCG-GGUC-Cg -3' miRNA: 3'- gUCCCACGGaucuCGU-GGCuCCAGaG- -5' |
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33327 | 5' | -58.3 | NC_007605.1 | + | 64848 | 0.66 | 0.819063 |
Target: 5'- --aGGUGCCUauAGAGgGCCuGGGUCa- -3' miRNA: 3'- gucCCACGGA--UCUCgUGGcUCCAGag -5' |
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33327 | 5' | -58.3 | NC_007605.1 | + | 116024 | 0.66 | 0.830777 |
Target: 5'- gAGGGgGCCUGGugccagacucucuucAGUgACCGgacGGGUCUCa -3' miRNA: 3'- gUCCCaCGGAUC---------------UCG-UGGC---UCCAGAG- -5' |
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33327 | 5' | -58.3 | NC_007605.1 | + | 75043 | 0.66 | 0.843741 |
Target: 5'- --cGGUGCCUGGGcGCaagagaucucgGCCGuuGUCUCa -3' miRNA: 3'- gucCCACGGAUCU-CG-----------UGGCucCAGAG- -5' |
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33327 | 5' | -58.3 | NC_007605.1 | + | 25099 | 0.67 | 0.756084 |
Target: 5'- gGGGG-GCUgAGGGCgACCGuccgggcccggaGGGUCUCa -3' miRNA: 3'- gUCCCaCGGaUCUCG-UGGC------------UCCAGAG- -5' |
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33327 | 5' | -58.3 | NC_007605.1 | + | 31236 | 0.67 | 0.756084 |
Target: 5'- gGGGG-GCUgAGGGCgACCGuccgggcccggaGGGUCUCa -3' miRNA: 3'- gUCCCaCGGaUCUCG-UGGC------------UCCAGAG- -5' |
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33327 | 5' | -58.3 | NC_007605.1 | + | 28167 | 0.67 | 0.756084 |
Target: 5'- gGGGG-GCUgAGGGCgACCGuccgggcccggaGGGUCUCa -3' miRNA: 3'- gUCCCaCGGaUCUCG-UGGC------------UCCAGAG- -5' |
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33327 | 5' | -58.3 | NC_007605.1 | + | 22030 | 0.67 | 0.756084 |
Target: 5'- gGGGG-GCUgAGGGCgACCGuccgggcccggaGGGUCUCa -3' miRNA: 3'- gUCCCaCGGaUCUCG-UGGC------------UCCAGAG- -5' |
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33327 | 5' | -58.3 | NC_007605.1 | + | 171599 | 0.67 | 0.7929 |
Target: 5'- gGGGGUGUUggcgGGGGCAUgGGGGggUCg -3' miRNA: 3'- gUCCCACGGa---UCUCGUGgCUCCagAG- -5' |
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33327 | 5' | -58.3 | NC_007605.1 | + | 107370 | 0.67 | 0.7929 |
Target: 5'- uGGGGUGCCUugcccuGGAGaCGCU--GGUCUUc -3' miRNA: 3'- gUCCCACGGA------UCUC-GUGGcuCCAGAG- -5' |
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33327 | 5' | -58.3 | NC_007605.1 | + | 48003 | 0.67 | 0.774739 |
Target: 5'- -cGGGccgugGCCaGGGGuUACCGAGGcCUCg -3' miRNA: 3'- guCCCa----CGGaUCUC-GUGGCUCCaGAG- -5' |
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33327 | 5' | -58.3 | NC_007605.1 | + | 157368 | 0.67 | 0.765469 |
Target: 5'- cCGGGG-GCCguggGGGGCACCGGuguGGUg-- -3' miRNA: 3'- -GUCCCaCGGa---UCUCGUGGCU---CCAgag -5' |
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33327 | 5' | -58.3 | NC_007605.1 | + | 104393 | 0.67 | 0.746592 |
Target: 5'- -uGGGUGaCCUGGccaGGCAccccaucuuccCCGAGGUCa- -3' miRNA: 3'- guCCCAC-GGAUC---UCGU-----------GGCUCCAGag -5' |
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33327 | 5' | -58.3 | NC_007605.1 | + | 12823 | 0.67 | 0.756084 |
Target: 5'- gGGGG-GCUgAGGGCgACCGuccgggcccggaGGGUCUCa -3' miRNA: 3'- gUCCCaCGGaUCUCG-UGGC------------UCCAGAG- -5' |
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33327 | 5' | -58.3 | NC_007605.1 | + | 18961 | 0.67 | 0.756084 |
Target: 5'- gGGGG-GCUgAGGGCgACCGuccgggcccggaGGGUCUCa -3' miRNA: 3'- gUCCCaCGGaUCUCG-UGGC------------UCCAGAG- -5' |
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33327 | 5' | -58.3 | NC_007605.1 | + | 41290 | 0.67 | 0.746592 |
Target: 5'- gCGGGGUGCCacgucaccccGGGGUGCUGGGGUgggggaugggCUCa -3' miRNA: 3'- -GUCCCACGGa---------UCUCGUGGCUCCA----------GAG- -5' |
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33327 | 5' | -58.3 | NC_007605.1 | + | 34305 | 0.67 | 0.756084 |
Target: 5'- gGGGG-GCUgAGGGCgACCGuccgggcccggaGGGUCUCa -3' miRNA: 3'- gUCCCaCGGaUCUCG-UGGC------------UCCAGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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