Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33327 | 5' | -58.3 | NC_007605.1 | + | 163231 | 0.73 | 0.406237 |
Target: 5'- aCAGGG-GCCacGAGUcguaguugaggcugGCCGGGGUCUCg -3' miRNA: 3'- -GUCCCaCGGauCUCG--------------UGGCUCCAGAG- -5' |
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33327 | 5' | -58.3 | NC_007605.1 | + | 75043 | 0.66 | 0.843741 |
Target: 5'- --cGGUGCCUGGGcGCaagagaucucgGCCGuuGUCUCa -3' miRNA: 3'- gucCCACGGAUCU-CG-----------UGGCucCAGAG- -5' |
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33327 | 5' | -58.3 | NC_007605.1 | + | 141710 | 0.66 | 0.843741 |
Target: 5'- gGGGGUGCCggcuGCAgCCG-GGUC-Cg -3' miRNA: 3'- gUCCCACGGaucuCGU-GGCuCCAGaG- -5' |
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33327 | 5' | -58.3 | NC_007605.1 | + | 61467 | 0.66 | 0.835693 |
Target: 5'- gAGGG-GCCgcUGGuGCGCCG-GG-CUCg -3' miRNA: 3'- gUCCCaCGG--AUCuCGUGGCuCCaGAG- -5' |
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33327 | 5' | -58.3 | NC_007605.1 | + | 126008 | 0.66 | 0.835693 |
Target: 5'- cCGGaGGUGuCCgUGGGGCACCagGAGcuGUCUCc -3' miRNA: 3'- -GUC-CCAC-GG-AUCUCGUGG--CUC--CAGAG- -5' |
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33327 | 5' | -58.3 | NC_007605.1 | + | 65525 | 0.66 | 0.835693 |
Target: 5'- uCGGGGUGC--AGGGCcugGCCGAuGUCUUu -3' miRNA: 3'- -GUCCCACGgaUCUCG---UGGCUcCAGAG- -5' |
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33327 | 5' | -58.3 | NC_007605.1 | + | 171599 | 0.67 | 0.7929 |
Target: 5'- gGGGGUGUUggcgGGGGCAUgGGGGggUCg -3' miRNA: 3'- gUCCCACGGa---UCUCGUGgCUCCagAG- -5' |
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33327 | 5' | -58.3 | NC_007605.1 | + | 107370 | 0.67 | 0.7929 |
Target: 5'- uGGGGUGCCUugcccuGGAGaCGCU--GGUCUUc -3' miRNA: 3'- gUCCCACGGA------UCUC-GUGGcuCCAGAG- -5' |
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33327 | 5' | -58.3 | NC_007605.1 | + | 48003 | 0.67 | 0.774739 |
Target: 5'- -cGGGccgugGCCaGGGGuUACCGAGGcCUCg -3' miRNA: 3'- guCCCa----CGGaUCUC-GUGGCUCCaGAG- -5' |
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33327 | 5' | -58.3 | NC_007605.1 | + | 157368 | 0.67 | 0.765469 |
Target: 5'- cCGGGG-GCCguggGGGGCACCGGuguGGUg-- -3' miRNA: 3'- -GUCCCaCGGa---UCUCGUGGCU---CCAgag -5' |
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33327 | 5' | -58.3 | NC_007605.1 | + | 115283 | 0.73 | 0.434849 |
Target: 5'- gGGuGGUGCUUGGA-CACaGAGGUCUCa -3' miRNA: 3'- gUC-CCACGGAUCUcGUGgCUCCAGAG- -5' |
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33327 | 5' | -58.3 | NC_007605.1 | + | 165806 | 0.72 | 0.508697 |
Target: 5'- uGGGGUGauCCUGuAGCGCCGcGGUUUCa -3' miRNA: 3'- gUCCCAC--GGAUcUCGUGGCuCCAGAG- -5' |
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33327 | 5' | -58.3 | NC_007605.1 | + | 91325 | 0.71 | 0.567355 |
Target: 5'- cCGGGucaaGUGgCUGGGGCACCGGGG-CUg -3' miRNA: 3'- -GUCC----CACgGAUCUCGUGGCUCCaGAg -5' |
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33327 | 5' | -58.3 | NC_007605.1 | + | 45074 | 0.7 | 0.605401 |
Target: 5'- aAGGGUGuCCUuggcguccggguGGGCcCCGAGGcUCUCg -3' miRNA: 3'- gUCCCAC-GGAu-----------CUCGuGGCUCC-AGAG- -5' |
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33327 | 5' | -58.3 | NC_007605.1 | + | 82592 | 0.7 | 0.607414 |
Target: 5'- gAGGGUgGCCaGGAuGcCACCGAGGUuCUUg -3' miRNA: 3'- gUCCCA-CGGaUCU-C-GUGGCUCCA-GAG- -5' |
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33327 | 5' | -58.3 | NC_007605.1 | + | 61247 | 0.68 | 0.687901 |
Target: 5'- aCAGGGgaggGCC-GGAGCcgggGCCGGGGcCUg -3' miRNA: 3'- -GUCCCa---CGGaUCUCG----UGGCUCCaGAg -5' |
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33327 | 5' | -58.3 | NC_007605.1 | + | 153793 | 0.68 | 0.707737 |
Target: 5'- -uGGGcgGCC-AGGGCAUCGgcaaagcgcaGGGUCUCg -3' miRNA: 3'- guCCCa-CGGaUCUCGUGGC----------UCCAGAG- -5' |
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33327 | 5' | -58.3 | NC_007605.1 | + | 116024 | 0.66 | 0.830777 |
Target: 5'- gAGGGgGCCUGGugccagacucucuucAGUgACCGgacGGGUCUCa -3' miRNA: 3'- gUCCCaCGGAUC---------------UCG-UGGC---UCCAGAG- -5' |
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33327 | 5' | -58.3 | NC_007605.1 | + | 34533 | 0.72 | 0.471039 |
Target: 5'- gAGGGcGCCUGGAgGCGggcCCGAGGggCUCu -3' miRNA: 3'- gUCCCaCGGAUCU-CGU---GGCUCCa-GAG- -5' |
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33327 | 5' | -58.3 | NC_007605.1 | + | 31464 | 0.72 | 0.471039 |
Target: 5'- gAGGGcGCCUGGAgGCGggcCCGAGGggCUCu -3' miRNA: 3'- gUCCCaCGGAUCU-CGU---GGCUCCa-GAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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