miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33338 5' -54.7 NC_007605.1 + 21475 0.69 0.847679
Target:  5'- -gGAGGGGGGGAGgcugGGGUgGCaGGAg- -3'
miRNA:   3'- gaCUCCCUCUUUUa---CCCGgCG-CCUac -5'
33338 5' -54.7 NC_007605.1 + 22523 0.69 0.839572
Target:  5'- -cGAGGGAGAGGcucGGGCC-UGGAg- -3'
miRNA:   3'- gaCUCCCUCUUUua-CCCGGcGCCUac -5'
33338 5' -54.7 NC_007605.1 + 22613 0.67 0.933195
Target:  5'- -aGGGGGAcagaGAGAA-GGGCCgGUGGggGg -3'
miRNA:   3'- gaCUCCCU----CUUUUaCCCGG-CGCCuaC- -5'
33338 5' -54.7 NC_007605.1 + 22763 0.71 0.749379
Target:  5'- gCUGAGGGGGcucGGGUGGGagGCGGGa- -3'
miRNA:   3'- -GACUCCCUCu--UUUACCCggCGCCUac -5'
33338 5' -54.7 NC_007605.1 + 22834 0.67 0.911062
Target:  5'- gCUGcAGGGGGGAcugacAccGGGCCGcCGGGg- -3'
miRNA:   3'- -GAC-UCCCUCUU-----UuaCCCGGC-GCCUac -5'
33338 5' -54.7 NC_007605.1 + 23018 0.68 0.90493
Target:  5'- -aGGGGGGcGggGAU-GGCC-CGGGUGg -3'
miRNA:   3'- gaCUCCCU-CuuUUAcCCGGcGCCUAC- -5'
33338 5' -54.7 NC_007605.1 + 24544 0.69 0.847679
Target:  5'- -gGAGGGGGGGAGgcugGGGUgGCaGGAg- -3'
miRNA:   3'- gaCUCCCUCUUUUa---CCCGgCG-CCUac -5'
33338 5' -54.7 NC_007605.1 + 25592 0.69 0.839572
Target:  5'- -cGAGGGAGAGGcucGGGCC-UGGAg- -3'
miRNA:   3'- gaCUCCCUCUUUua-CCCGGcGCCUac -5'
33338 5' -54.7 NC_007605.1 + 25682 0.67 0.933195
Target:  5'- -aGGGGGAcagaGAGAA-GGGCCgGUGGggGg -3'
miRNA:   3'- gaCUCCCU----CUUUUaCCCGG-CGCCuaC- -5'
33338 5' -54.7 NC_007605.1 + 25832 0.71 0.749379
Target:  5'- gCUGAGGGGGcucGGGUGGGagGCGGGa- -3'
miRNA:   3'- -GACUCCCUCu--UUUACCCggCGCCUac -5'
33338 5' -54.7 NC_007605.1 + 25903 0.67 0.911062
Target:  5'- gCUGcAGGGGGGAcugacAccGGGCCGcCGGGg- -3'
miRNA:   3'- -GAC-UCCCUCUU-----UuaCCCGGC-GCCUac -5'
33338 5' -54.7 NC_007605.1 + 26087 0.68 0.90493
Target:  5'- -aGGGGGGcGggGAU-GGCC-CGGGUGg -3'
miRNA:   3'- gaCUCCCU-CuuUUAcCCGGcGCCUAC- -5'
33338 5' -54.7 NC_007605.1 + 27613 0.69 0.847679
Target:  5'- -gGAGGGGGGGAGgcugGGGUgGCaGGAg- -3'
miRNA:   3'- gaCUCCCUCUUUUa---CCCGgCG-CCUac -5'
33338 5' -54.7 NC_007605.1 + 28661 0.69 0.839572
Target:  5'- -cGAGGGAGAGGcucGGGCC-UGGAg- -3'
miRNA:   3'- gaCUCCCUCUUUua-CCCGGcGCCUac -5'
33338 5' -54.7 NC_007605.1 + 28751 0.67 0.933195
Target:  5'- -aGGGGGAcagaGAGAA-GGGCCgGUGGggGg -3'
miRNA:   3'- gaCUCCCU----CUUUUaCCCGG-CGCCuaC- -5'
33338 5' -54.7 NC_007605.1 + 28901 0.71 0.749379
Target:  5'- gCUGAGGGGGcucGGGUGGGagGCGGGa- -3'
miRNA:   3'- -GACUCCCUCu--UUUACCCggCGCCUac -5'
33338 5' -54.7 NC_007605.1 + 28972 0.67 0.911062
Target:  5'- gCUGcAGGGGGGAcugacAccGGGCCGcCGGGg- -3'
miRNA:   3'- -GAC-UCCCUCUU-----UuaCCCGGC-GCCUac -5'
33338 5' -54.7 NC_007605.1 + 29155 0.68 0.90493
Target:  5'- -aGGGGGGcGggGAU-GGCC-CGGGUGg -3'
miRNA:   3'- gaCUCCCU-CuuUUAcCCGGcGCCUAC- -5'
33338 5' -54.7 NC_007605.1 + 30682 0.69 0.847679
Target:  5'- -gGAGGGGGGGAGgcugGGGUgGCaGGAg- -3'
miRNA:   3'- gaCUCCCUCUUUUa---CCCGgCG-CCUac -5'
33338 5' -54.7 NC_007605.1 + 31730 0.69 0.839572
Target:  5'- -cGAGGGAGAGGcucGGGCC-UGGAg- -3'
miRNA:   3'- gaCUCCCUCUUUua-CCCGGcGCCUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.