miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33338 5' -54.7 NC_007605.1 + 5129 0.68 0.896605
Target:  5'- gCUGGGGGuGcAAGUuuuggcuggccuggGGGCCGUGGGg- -3'
miRNA:   3'- -GACUCCCuCuUUUA--------------CCCGGCGCCUac -5'
33338 5' -54.7 NC_007605.1 + 6115 0.69 0.854807
Target:  5'- gUGAGGGcAGAGGacauugggcagguGUGGGCCaCGGGg- -3'
miRNA:   3'- gACUCCC-UCUUU-------------UACCCGGcGCCUac -5'
33338 5' -54.7 NC_007605.1 + 12268 0.69 0.847679
Target:  5'- -gGAGGGGGGGAGgcugGGGUgGCaGGAg- -3'
miRNA:   3'- gaCUCCCUCUUUUa---CCCGgCG-CCUac -5'
33338 5' -54.7 NC_007605.1 + 13316 0.69 0.839572
Target:  5'- -cGAGGGAGAGGcucGGGCC-UGGAg- -3'
miRNA:   3'- gaCUCCCUCUUUua-CCCGGcGCCUac -5'
33338 5' -54.7 NC_007605.1 + 13406 0.67 0.933195
Target:  5'- -aGGGGGAcagaGAGAA-GGGCCgGUGGggGg -3'
miRNA:   3'- gaCUCCCU----CUUUUaCCCGG-CGCCuaC- -5'
33338 5' -54.7 NC_007605.1 + 13556 0.71 0.749379
Target:  5'- gCUGAGGGGGcucGGGUGGGagGCGGGa- -3'
miRNA:   3'- -GACUCCCUCu--UUUACCCggCGCCUac -5'
33338 5' -54.7 NC_007605.1 + 13627 0.67 0.911062
Target:  5'- gCUGcAGGGGGGAcugacAccGGGCCGcCGGGg- -3'
miRNA:   3'- -GAC-UCCCUCUU-----UuaCCCGGC-GCCUac -5'
33338 5' -54.7 NC_007605.1 + 13811 0.68 0.90493
Target:  5'- -aGGGGGGcGggGAU-GGCC-CGGGUGg -3'
miRNA:   3'- gaCUCCCU-CuuUUAcCCGGcGCCUAC- -5'
33338 5' -54.7 NC_007605.1 + 15337 0.69 0.847679
Target:  5'- -gGAGGGGGGGAGgcugGGGUgGCaGGAg- -3'
miRNA:   3'- gaCUCCCUCUUUUa---CCCGgCG-CCUac -5'
33338 5' -54.7 NC_007605.1 + 16385 0.69 0.839572
Target:  5'- -cGAGGGAGAGGcucGGGCC-UGGAg- -3'
miRNA:   3'- gaCUCCCUCUUUua-CCCGGcGCCUac -5'
33338 5' -54.7 NC_007605.1 + 16475 0.67 0.933195
Target:  5'- -aGGGGGAcagaGAGAA-GGGCCgGUGGggGg -3'
miRNA:   3'- gaCUCCCU----CUUUUaCCCGG-CGCCuaC- -5'
33338 5' -54.7 NC_007605.1 + 16625 0.71 0.749379
Target:  5'- gCUGAGGGGGcucGGGUGGGagGCGGGa- -3'
miRNA:   3'- -GACUCCCUCu--UUUACCCggCGCCUac -5'
33338 5' -54.7 NC_007605.1 + 16696 0.67 0.911062
Target:  5'- gCUGcAGGGGGGAcugacAccGGGCCGcCGGGg- -3'
miRNA:   3'- -GAC-UCCCUCUU-----UuaCCCGGC-GCCUac -5'
33338 5' -54.7 NC_007605.1 + 16880 0.68 0.90493
Target:  5'- -aGGGGGGcGggGAU-GGCC-CGGGUGg -3'
miRNA:   3'- gaCUCCCU-CuuUUAcCCGGcGCCUAC- -5'
33338 5' -54.7 NC_007605.1 + 18406 0.69 0.847679
Target:  5'- -gGAGGGGGGGAGgcugGGGUgGCaGGAg- -3'
miRNA:   3'- gaCUCCCUCUUUUa---CCCGgCG-CCUac -5'
33338 5' -54.7 NC_007605.1 + 19454 0.69 0.839572
Target:  5'- -cGAGGGAGAGGcucGGGCC-UGGAg- -3'
miRNA:   3'- gaCUCCCUCUUUua-CCCGGcGCCUac -5'
33338 5' -54.7 NC_007605.1 + 19544 0.67 0.933195
Target:  5'- -aGGGGGAcagaGAGAA-GGGCCgGUGGggGg -3'
miRNA:   3'- gaCUCCCU----CUUUUaCCCGG-CGCCuaC- -5'
33338 5' -54.7 NC_007605.1 + 19694 0.71 0.749379
Target:  5'- gCUGAGGGGGcucGGGUGGGagGCGGGa- -3'
miRNA:   3'- -GACUCCCUCu--UUUACCCggCGCCUac -5'
33338 5' -54.7 NC_007605.1 + 19765 0.67 0.911062
Target:  5'- gCUGcAGGGGGGAcugacAccGGGCCGcCGGGg- -3'
miRNA:   3'- -GAC-UCCCUCUU-----UuaCCCGGC-GCCUac -5'
33338 5' -54.7 NC_007605.1 + 19949 0.68 0.90493
Target:  5'- -aGGGGGGcGggGAU-GGCC-CGGGUGg -3'
miRNA:   3'- gaCUCCCU-CuuUUAcCCGGcGCCUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.