miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33338 5' -54.7 NC_007605.1 + 82298 1.08 0.005163
Target:  5'- gCUGAGGGAGAAAAUGGGCCGCGGAUGc -3'
miRNA:   3'- -GACUCCCUCUUUUACCCGGCGCCUAC- -5'
33338 5' -54.7 NC_007605.1 + 82457 0.9 0.076916
Target:  5'- gCUGAuGGAGGAAAUGGGCUGCGGGUGc -3'
miRNA:   3'- -GACUcCCUCUUUUACCCGGCGCCUAC- -5'
33338 5' -54.7 NC_007605.1 + 171311 0.79 0.348158
Target:  5'- -cGGGGGGGcuGggGGGCCGCGGggGa -3'
miRNA:   3'- gaCUCCCUCuuUuaCCCGGCGCCuaC- -5'
33338 5' -54.7 NC_007605.1 + 170774 0.79 0.348158
Target:  5'- -cGGGGGGGcuGggGGGCCGCGGggGa -3'
miRNA:   3'- gaCUCCCUCuuUuaCCCGGCGCCuaC- -5'
33338 5' -54.7 NC_007605.1 + 170251 0.79 0.348158
Target:  5'- -cGGGGGGGcuGggGGGCCGCGGggGa -3'
miRNA:   3'- gaCUCCCUCuuUuaCCCGGCGCCuaC- -5'
33338 5' -54.7 NC_007605.1 + 169714 0.79 0.348158
Target:  5'- -cGGGGGGGcuGggGGGCCGCGGggGa -3'
miRNA:   3'- gaCUCCCUCuuUuaCCCGGCGCCuaC- -5'
33338 5' -54.7 NC_007605.1 + 58043 0.77 0.441191
Target:  5'- -gGAGGGcuGGAGGccgGGGCCGCGGAg- -3'
miRNA:   3'- gaCUCCC--UCUUUua-CCCGGCGCCUac -5'
33338 5' -54.7 NC_007605.1 + 157438 0.75 0.526851
Target:  5'- -cGGGGGuGcucccgcGGGCCGCGGAUGg -3'
miRNA:   3'- gaCUCCCuCuuuua--CCCGGCGCCUAC- -5'
33338 5' -54.7 NC_007605.1 + 54798 0.74 0.577072
Target:  5'- gUGcGGcGGAGAGAAUGgaGGCCGCGGAa- -3'
miRNA:   3'- gAC-UC-CCUCUUUUAC--CCGGCGCCUac -5'
33338 5' -54.7 NC_007605.1 + 161110 0.73 0.638549
Target:  5'- -gGAGGGAGugugGGGUGGGCC-CGGGg- -3'
miRNA:   3'- gaCUCCCUCu---UUUACCCGGcGCCUac -5'
33338 5' -54.7 NC_007605.1 + 40027 0.72 0.6897
Target:  5'- cCUGGGGGAGGGAucggcgGGGCUGgGGu-- -3'
miRNA:   3'- -GACUCCCUCUUUua----CCCGGCgCCuac -5'
33338 5' -54.7 NC_007605.1 + 111131 0.71 0.729802
Target:  5'- -cGGGGGAGcuAcgGGGCCGUGuAUGc -3'
miRNA:   3'- gaCUCCCUCuuUuaCCCGGCGCcUAC- -5'
33338 5' -54.7 NC_007605.1 + 61008 0.71 0.739638
Target:  5'- -aGAGGGGGAAGGcaaGGCCGgGGAc- -3'
miRNA:   3'- gaCUCCCUCUUUUac-CCGGCgCCUac -5'
33338 5' -54.7 NC_007605.1 + 16625 0.71 0.749379
Target:  5'- gCUGAGGGGGcucGGGUGGGagGCGGGa- -3'
miRNA:   3'- -GACUCCCUCu--UUUACCCggCGCCUac -5'
33338 5' -54.7 NC_007605.1 + 19694 0.71 0.749379
Target:  5'- gCUGAGGGGGcucGGGUGGGagGCGGGa- -3'
miRNA:   3'- -GACUCCCUCu--UUUACCCggCGCCUac -5'
33338 5' -54.7 NC_007605.1 + 25832 0.71 0.749379
Target:  5'- gCUGAGGGGGcucGGGUGGGagGCGGGa- -3'
miRNA:   3'- -GACUCCCUCu--UUUACCCggCGCCUac -5'
33338 5' -54.7 NC_007605.1 + 28901 0.71 0.749379
Target:  5'- gCUGAGGGGGcucGGGUGGGagGCGGGa- -3'
miRNA:   3'- -GACUCCCUCu--UUUACCCggCGCCUac -5'
33338 5' -54.7 NC_007605.1 + 22763 0.71 0.749379
Target:  5'- gCUGAGGGGGcucGGGUGGGagGCGGGa- -3'
miRNA:   3'- -GACUCCCUCu--UUUACCCggCGCCUac -5'
33338 5' -54.7 NC_007605.1 + 31970 0.71 0.749379
Target:  5'- gCUGAGGGGGcucGGGUGGGagGCGGGa- -3'
miRNA:   3'- -GACUCCCUCu--UUUACCCggCGCCUac -5'
33338 5' -54.7 NC_007605.1 + 35039 0.71 0.749379
Target:  5'- gCUGAGGGGGcucGGGUGGGagGCGGGa- -3'
miRNA:   3'- -GACUCCCUCu--UUUACCCggCGCCUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.