miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33338 5' -54.7 NC_007605.1 + 59697 0.67 0.921499
Target:  5'- gUGAGGGGGAAucgucgguuaGGGCCGgcaCGaGGUGg -3'
miRNA:   3'- gACUCCCUCUUuua-------CCCGGC---GC-CUAC- -5'
33338 5' -54.7 NC_007605.1 + 57988 0.68 0.891286
Target:  5'- -gGAGGGAgcggggaccccGggGGUGugaccuaGGCCGgGGAUGg -3'
miRNA:   3'- gaCUCCCU-----------CuuUUAC-------CCGGCgCCUAC- -5'
33338 5' -54.7 NC_007605.1 + 51283 0.68 0.891959
Target:  5'- -aGAGGGGGcucuGUGGGCUG-GGAg- -3'
miRNA:   3'- gaCUCCCUCuuu-UACCCGGCgCCUac -5'
33338 5' -54.7 NC_007605.1 + 5129 0.68 0.896605
Target:  5'- gCUGGGGGuGcAAGUuuuggcuggccuggGGGCCGUGGGg- -3'
miRNA:   3'- -GACUCCCuCuUUUA--------------CCCGGCGCCUac -5'
33338 5' -54.7 NC_007605.1 + 63080 0.68 0.898561
Target:  5'- -cGGGGGAGguGGcGGucGCCGgGGGUGg -3'
miRNA:   3'- gaCUCCCUCuuUUaCC--CGGCgCCUAC- -5'
33338 5' -54.7 NC_007605.1 + 48449 0.68 0.90493
Target:  5'- --aGGGGAGGAGcucguggGGGCCGgGGGg- -3'
miRNA:   3'- gacUCCCUCUUUua-----CCCGGCgCCUac -5'
33338 5' -54.7 NC_007605.1 + 55655 0.68 0.90493
Target:  5'- aUGAcGGGGAugGUgaGGGCCGCGG-UGu -3'
miRNA:   3'- gACUcCCUCUuuUA--CCCGGCGCCuAC- -5'
33338 5' -54.7 NC_007605.1 + 100107 0.67 0.911062
Target:  5'- -gGGGGGcAGAAuuUGcGGCCGgGGGa- -3'
miRNA:   3'- gaCUCCC-UCUUuuAC-CCGGCgCCUac -5'
33338 5' -54.7 NC_007605.1 + 168784 0.67 0.916956
Target:  5'- -aGAGGGGGGguccucGAggGGGCCgucGCGGGc- -3'
miRNA:   3'- gaCUCCCUCU------UUuaCCCGG---CGCCUac -5'
33338 5' -54.7 NC_007605.1 + 119557 0.68 0.885126
Target:  5'- -cGAGGagaGAGAGAGUaGGuCCGCGGAa- -3'
miRNA:   3'- gaCUCC---CUCUUUUAcCC-GGCGCCUac -5'
33338 5' -54.7 NC_007605.1 + 58102 0.68 0.870789
Target:  5'- -cGGGGccgcGGAGGccgGGGCCGCGGAg- -3'
miRNA:   3'- gaCUCCc---UCUUUua-CCCGGCGCCUac -5'
33338 5' -54.7 NC_007605.1 + 58072 0.68 0.870789
Target:  5'- -cGGGGccgcGGAGGccgGGGCCGCGGAg- -3'
miRNA:   3'- gaCUCCc---UCUUUua-CCCGGCGCCUac -5'
33338 5' -54.7 NC_007605.1 + 157438 0.75 0.526851
Target:  5'- -cGGGGGuGcucccgcGGGCCGCGGAUGg -3'
miRNA:   3'- gaCUCCCuCuuuua--CCCGGCGCCUAC- -5'
33338 5' -54.7 NC_007605.1 + 57807 0.7 0.787211
Target:  5'- gCUGaAGGGGGgcGAUGGGgcggaaCGUGGGUGc -3'
miRNA:   3'- -GAC-UCCCUCuuUUACCCg-----GCGCCUAC- -5'
33338 5' -54.7 NC_007605.1 + 104071 0.69 0.848479
Target:  5'- -gGAGGGGGcugccacccccGGGCCGUGGAa- -3'
miRNA:   3'- gaCUCCCUCuuuua------CCCGGCGCCUac -5'
33338 5' -54.7 NC_007605.1 + 6115 0.69 0.854807
Target:  5'- gUGAGGGcAGAGGacauugggcagguGUGGGCCaCGGGg- -3'
miRNA:   3'- gACUCCC-UCUUU-------------UACCCGGcGCCUac -5'
33338 5' -54.7 NC_007605.1 + 40721 0.69 0.858696
Target:  5'- -gGAGGGGGAGGAuUGGGCucCGCcccgauauaccuaguGGGUGg -3'
miRNA:   3'- gaCUCCCUCUUUU-ACCCG--GCG---------------CCUAC- -5'
33338 5' -54.7 NC_007605.1 + 143537 0.69 0.858696
Target:  5'- -gGAGGGGGAGGAUcGGGCucCGCcccgauauaccuaguGGGUGg -3'
miRNA:   3'- gaCUCCCUCUUUUA-CCCG--GCG---------------CCUAC- -5'
33338 5' -54.7 NC_007605.1 + 157347 0.69 0.863294
Target:  5'- uUGAGGGugcccAGGGAcuucccggGGGCCGUGGggGg -3'
miRNA:   3'- gACUCCC-----UCUUUua------CCCGGCGCCuaC- -5'
33338 5' -54.7 NC_007605.1 + 60635 0.68 0.870789
Target:  5'- -aGAGGGAGG---UGGGCCaggcaaGCGG-UGg -3'
miRNA:   3'- gaCUCCCUCUuuuACCCGG------CGCCuAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.