miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33339 5' -63.2 NC_007605.1 + 162894 0.66 0.658259
Target:  5'- uCCCCCCCGUcauguccacgcaGCGGagggaccccuaugugAUCUCGGGggCc -3'
miRNA:   3'- -GGGGGGGCA------------CGCCg--------------UAGAGCCCgaGa -5'
33339 5' -63.2 NC_007605.1 + 13269 0.66 0.638072
Target:  5'- uCCCUUCUG-GgGGaCAUCcUGGGCUCUg -3'
miRNA:   3'- -GGGGGGGCaCgCC-GUAGaGCCCGAGA- -5'
33339 5' -63.2 NC_007605.1 + 16338 0.66 0.638072
Target:  5'- uCCCUUCUG-GgGGaCAUCcUGGGCUCUg -3'
miRNA:   3'- -GGGGGGGCaCgCC-GUAGaGCCCGAGA- -5'
33339 5' -63.2 NC_007605.1 + 110881 0.66 0.638072
Target:  5'- gCCCCUgGUGCGGgGcUUUCaGGGcCUCa -3'
miRNA:   3'- gGGGGGgCACGCCgU-AGAG-CCC-GAGa -5'
33339 5' -63.2 NC_007605.1 + 34752 0.66 0.638072
Target:  5'- uCCCUUCUG-GgGGaCAUCcUGGGCUCUg -3'
miRNA:   3'- -GGGGGGGCaCgCC-GUAGaGCCCGAGA- -5'
33339 5' -63.2 NC_007605.1 + 31683 0.66 0.638072
Target:  5'- uCCCUUCUG-GgGGaCAUCcUGGGCUCUg -3'
miRNA:   3'- -GGGGGGGCaCgCC-GUAGaGCCCGAGA- -5'
33339 5' -63.2 NC_007605.1 + 28614 0.66 0.638072
Target:  5'- uCCCUUCUG-GgGGaCAUCcUGGGCUCUg -3'
miRNA:   3'- -GGGGGGGCaCgCC-GUAGaGCCCGAGA- -5'
33339 5' -63.2 NC_007605.1 + 25545 0.66 0.638072
Target:  5'- uCCCUUCUG-GgGGaCAUCcUGGGCUCUg -3'
miRNA:   3'- -GGGGGGGCaCgCC-GUAGaGCCCGAGA- -5'
33339 5' -63.2 NC_007605.1 + 22476 0.66 0.638072
Target:  5'- uCCCUUCUG-GgGGaCAUCcUGGGCUCUg -3'
miRNA:   3'- -GGGGGGGCaCgCC-GUAGaGCCCGAGA- -5'
33339 5' -63.2 NC_007605.1 + 19407 0.66 0.638072
Target:  5'- uCCCUUCUG-GgGGaCAUCcUGGGCUCUg -3'
miRNA:   3'- -GGGGGGGCaCgCC-GUAGaGCCCGAGA- -5'
33339 5' -63.2 NC_007605.1 + 170520 0.67 0.599622
Target:  5'- -aCCCCCGUGgGGCAUgggGGGC-Cg -3'
miRNA:   3'- ggGGGGGCACgCCGUAgagCCCGaGa -5'
33339 5' -63.2 NC_007605.1 + 156151 0.67 0.552072
Target:  5'- gCCUCCCCaagcaGUGCGGCGg--CGGuCUCUg -3'
miRNA:   3'- -GGGGGGG-----CACGCCGUagaGCCcGAGA- -5'
33339 5' -63.2 NC_007605.1 + 159509 0.68 0.505724
Target:  5'- gCCCCagCCGgccGgGGCAcCUcCGGGCUCUc -3'
miRNA:   3'- -GGGGg-GGCa--CgCCGUaGA-GCCCGAGA- -5'
33339 5' -63.2 NC_007605.1 + 171132 0.69 0.443871
Target:  5'- gCCCCCCCGcacagaGCGGCG-CUacggCGGGCg-- -3'
miRNA:   3'- -GGGGGGGCa-----CGCCGUaGA----GCCCGaga -5'
33339 5' -63.2 NC_007605.1 + 170072 0.69 0.443871
Target:  5'- gCCCCCCCGcacagaGCGGCG-CUacggCGGGCg-- -3'
miRNA:   3'- -GGGGGGGCa-----CGCCGUaGA----GCCCGaga -5'
33339 5' -63.2 NC_007605.1 + 169535 0.69 0.443871
Target:  5'- gCCCCCCCGcacagaGCGGCG-CUacggCGGGCg-- -3'
miRNA:   3'- -GGGGGGGCa-----CGCCGUaGA----GCCCGaga -5'
33339 5' -63.2 NC_007605.1 + 170595 0.69 0.443871
Target:  5'- gCCCCCCCGcacagaGCGGCG-CUacggCGGGCg-- -3'
miRNA:   3'- -GGGGGGGCa-----CGCCGUaGA----GCCCGaga -5'
33339 5' -63.2 NC_007605.1 + 3033 0.7 0.394395
Target:  5'- aCCCggCCCCGU---GCAUCUCGGGCUa- -3'
miRNA:   3'- -GGG--GGGGCAcgcCGUAGAGCCCGAga -5'
33339 5' -63.2 NC_007605.1 + 151330 0.71 0.363456
Target:  5'- gCCCCCCGUGaCGGag-CUgGGGCa-- -3'
miRNA:   3'- gGGGGGGCAC-GCCguaGAgCCCGaga -5'
33339 5' -63.2 NC_007605.1 + 150609 0.72 0.293714
Target:  5'- gCCCUCCCGgGCGGUGggcggCcCGGGCUCc -3'
miRNA:   3'- -GGGGGGGCaCGCCGUa----GaGCCCGAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.