miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33345 3' -48.3 NC_007605.1 + 121331 0.66 0.999813
Target:  5'- aGGGAUUCaC-AGUGCuccgguauucauaGGCGGCAUCCg -3'
miRNA:   3'- gUUCUAAGcGcUCACG-------------CUGUUGUAGG- -5'
33345 3' -48.3 NC_007605.1 + 117561 0.66 0.999767
Target:  5'- uUAGGGUccgcccugUCGUGAGUcacgGCGGCGAU-UCCg -3'
miRNA:   3'- -GUUCUA--------AGCGCUCA----CGCUGUUGuAGG- -5'
33345 3' -48.3 NC_007605.1 + 59227 0.66 0.999705
Target:  5'- cCGGGGUcuuaCGCGGcuGgcgGCGGCAGCcgCCg -3'
miRNA:   3'- -GUUCUAa---GCGCU--Ca--CGCUGUUGuaGG- -5'
33345 3' -48.3 NC_007605.1 + 49067 0.66 0.999627
Target:  5'- gUAGGc--CGCGuuGUGCGGCAGCAcugCCc -3'
miRNA:   3'- -GUUCuaaGCGCu-CACGCUGUUGUa--GG- -5'
33345 3' -48.3 NC_007605.1 + 103533 0.67 0.999266
Target:  5'- ------cCGCGAGcGCGACcgggggagaucauGGCAUCCg -3'
miRNA:   3'- guucuaaGCGCUCaCGCUG-------------UUGUAGG- -5'
33345 3' -48.3 NC_007605.1 + 122130 0.67 0.99892
Target:  5'- uGAGGaUUGCGcauaacaaAG-GUGGCAACAUCCu -3'
miRNA:   3'- gUUCUaAGCGC--------UCaCGCUGUUGUAGG- -5'
33345 3' -48.3 NC_007605.1 + 48224 0.67 0.998898
Target:  5'- gGAGAUUCGCGAcagaGUuacaccaGCGACuGCA-CCu -3'
miRNA:   3'- gUUCUAAGCGCU----CA-------CGCUGuUGUaGG- -5'
33345 3' -48.3 NC_007605.1 + 164502 0.68 0.996789
Target:  5'- --uGGUUUGCGAG-GCugGGCGGCAUgCCa -3'
miRNA:   3'- guuCUAAGCGCUCaCG--CUGUUGUA-GG- -5'
33345 3' -48.3 NC_007605.1 + 4929 0.69 0.994822
Target:  5'- aCGGGuguucuUUCGCGAGguuaGgGACAACAcguUCCu -3'
miRNA:   3'- -GUUCu-----AAGCGCUCa---CgCUGUUGU---AGG- -5'
33345 3' -48.3 NC_007605.1 + 157039 0.7 0.989473
Target:  5'- cCAGGGggCGCGAGUaGC-ACAugGUCUc -3'
miRNA:   3'- -GUUCUaaGCGCUCA-CGcUGUugUAGG- -5'
33345 3' -48.3 NC_007605.1 + 67305 0.7 0.989473
Target:  5'- aGGGAggcagCGCGGGUGUGgaGCAGCucAUCCc -3'
miRNA:   3'- gUUCUaa---GCGCUCACGC--UGUUG--UAGG- -5'
33345 3' -48.3 NC_007605.1 + 169207 0.71 0.986398
Target:  5'- aAAGAggCGCGGG-GCGcGCAACGUUg -3'
miRNA:   3'- gUUCUaaGCGCUCaCGC-UGUUGUAGg -5'
33345 3' -48.3 NC_007605.1 + 63027 0.72 0.963538
Target:  5'- gCAGGccuccUCGCuGAGUGCGGCGGcCGUCUg -3'
miRNA:   3'- -GUUCua---AGCG-CUCACGCUGUU-GUAGG- -5'
33345 3' -48.3 NC_007605.1 + 101257 1.14 0.010347
Target:  5'- aCAAGAUUCGCGAGUGCGACAACAUCCu -3'
miRNA:   3'- -GUUCUAAGCGCUCACGCUGUUGUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.