miRNA display CGI


Results 21 - 40 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33345 5' -63.3 NC_007605.1 + 140829 0.69 0.405787
Target:  5'- gGUGGGcCAcccggccgcccccgaGCUCCAGGGCUGgGuCCUGa -3'
miRNA:   3'- -CACCC-GU---------------UGGGGUCCCGGCgCuGGAU- -5'
33345 5' -63.3 NC_007605.1 + 85090 0.69 0.410757
Target:  5'- -gGGGCAGCUguuuCCGGuGGCCGgGACUg- -3'
miRNA:   3'- caCCCGUUGG----GGUC-CCGGCgCUGGau -5'
33345 5' -63.3 NC_007605.1 + 170642 0.69 0.410757
Target:  5'- -gGGGUccgcgGGCUCCGGGGCUGCGGgCg- -3'
miRNA:   3'- caCCCG-----UUGGGGUCCCGGCGCUgGau -5'
33345 5' -63.3 NC_007605.1 + 50539 0.69 0.410757
Target:  5'- -gGGGCGgccaagccggACCCCAGGGCgGguGCCUGg -3'
miRNA:   3'- caCCCGU----------UGGGGUCCCGgCgcUGGAU- -5'
33345 5' -63.3 NC_007605.1 + 39673 0.69 0.427593
Target:  5'- -cGGGCGGCCgCCGguggguccgcuGGGCCGCuGCCc- -3'
miRNA:   3'- caCCCGUUGG-GGU-----------CCCGGCGcUGGau -5'
33345 5' -63.3 NC_007605.1 + 150884 0.69 0.427593
Target:  5'- ---cGCAGCCUCcGGGuCCGUGACCUGg -3'
miRNA:   3'- caccCGUUGGGGuCCC-GGCGCUGGAU- -5'
33345 5' -63.3 NC_007605.1 + 39548 0.69 0.427593
Target:  5'- -cGGGCGGCCgCCGguggguccgcuGGGCCGCuGCCc- -3'
miRNA:   3'- caCCCGUUGG-GGU-----------CCCGGCGcUGGau -5'
33345 5' -63.3 NC_007605.1 + 39423 0.69 0.427593
Target:  5'- -cGGGCGGCCgCCGguggguccgcuGGGCCGCuGCCc- -3'
miRNA:   3'- caCCCGUUGG-GGU-----------CCCGGCGcUGGau -5'
33345 5' -63.3 NC_007605.1 + 39298 0.69 0.427593
Target:  5'- -cGGGCGGCCgCCGguggguccgcuGGGCCGCuGCCc- -3'
miRNA:   3'- caCCCGUUGG-GGU-----------CCCGGCGcUGGau -5'
33345 5' -63.3 NC_007605.1 + 38299 0.69 0.427593
Target:  5'- -cGGGCGGCCgCCGguggguccgcuGGGCCGCuGCCc- -3'
miRNA:   3'- caCCCGUUGG-GGU-----------CCCGGCGcUGGau -5'
33345 5' -63.3 NC_007605.1 + 38424 0.69 0.427593
Target:  5'- -cGGGCGGCCgCCGguggguccgcuGGGCCGCuGCCc- -3'
miRNA:   3'- caCCCGUUGG-GGU-----------CCCGGCGcUGGau -5'
33345 5' -63.3 NC_007605.1 + 38549 0.69 0.427593
Target:  5'- -cGGGCGGCCgCCGguggguccgcuGGGCCGCuGCCc- -3'
miRNA:   3'- caCCCGUUGG-GGU-----------CCCGGCGcUGGau -5'
33345 5' -63.3 NC_007605.1 + 38674 0.69 0.427593
Target:  5'- -cGGGCGGCCgCCGguggguccgcuGGGCCGCuGCCc- -3'
miRNA:   3'- caCCCGUUGG-GGU-----------CCCGGCGcUGGau -5'
33345 5' -63.3 NC_007605.1 + 38799 0.69 0.427593
Target:  5'- -cGGGCGGCCgCCGguggguccgcuGGGCCGCuGCCc- -3'
miRNA:   3'- caCCCGUUGG-GGU-----------CCCGGCGcUGGau -5'
33345 5' -63.3 NC_007605.1 + 38923 0.69 0.427593
Target:  5'- -cGGGCGGCCgCCGguggguccgcuGGGCCGCuGCCc- -3'
miRNA:   3'- caCCCGUUGG-GGU-----------CCCGGCGcUGGau -5'
33345 5' -63.3 NC_007605.1 + 39048 0.69 0.427593
Target:  5'- -cGGGCGGCCgCCGguggguccgcuGGGCCGCuGCCc- -3'
miRNA:   3'- caCCCGUUGG-GGU-----------CCCGGCGcUGGau -5'
33345 5' -63.3 NC_007605.1 + 39173 0.69 0.427593
Target:  5'- -cGGGCGGCCgCCGguggguccgcuGGGCCGCuGCCc- -3'
miRNA:   3'- caCCCGUUGG-GGU-----------CCCGGCGcUGGau -5'
33345 5' -63.3 NC_007605.1 + 5307 0.68 0.436163
Target:  5'- cUGcGUGGCCuCCGGGGCUGCGuCCUGc -3'
miRNA:   3'- cACcCGUUGG-GGUCCCGGCGCuGGAU- -5'
33345 5' -63.3 NC_007605.1 + 39777 0.68 0.44483
Target:  5'- -gGGGCcACCCCccacccggagcGGGGCaGCGGCCc- -3'
miRNA:   3'- caCCCGuUGGGG-----------UCCCGgCGCUGGau -5'
33345 5' -63.3 NC_007605.1 + 39902 0.68 0.44483
Target:  5'- -gGGGCcACCCCccacccggagcGGGGCaGCGGCCc- -3'
miRNA:   3'- caCCCGuUGGGG-----------UCCCGgCGCUGGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.