miRNA display CGI


Results 41 - 60 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33345 5' -63.3 NC_007605.1 + 169851 0.66 0.554416
Target:  5'- aUGGaGCGugacgaaggGCCCCAGGGCugaccccggcaaaCGUGACCc- -3'
miRNA:   3'- cACC-CGU---------UGGGGUCCCG-------------GCGCUGGau -5'
33345 5' -63.3 NC_007605.1 + 170389 0.66 0.554416
Target:  5'- aUGGaGCGugacgaaggGCCCCAGGGCugaccccggcaaaCGUGACCc- -3'
miRNA:   3'- cACC-CGU---------UGGGGUCCCG-------------GCGCUGGau -5'
33345 5' -63.3 NC_007605.1 + 158622 0.66 0.545788
Target:  5'- -cGGGCuGCUCUGGGGuCUGCGcACCg- -3'
miRNA:   3'- caCCCGuUGGGGUCCC-GGCGC-UGGau -5'
33345 5' -63.3 NC_007605.1 + 34235 0.66 0.541967
Target:  5'- -cGGGCGAUCCCccuccacuuccccGGGCCuaGGCCg- -3'
miRNA:   3'- caCCCGUUGGGGu------------CCCGGcgCUGGau -5'
33345 5' -63.3 NC_007605.1 + 15822 0.66 0.541967
Target:  5'- -cGGGCGAUCCCccuccacuuccccGGGCCuaGGCCg- -3'
miRNA:   3'- caCCCGUUGGGGu------------CCCGGcgCUGGau -5'
33345 5' -63.3 NC_007605.1 + 18891 0.66 0.541967
Target:  5'- -cGGGCGAUCCCccuccacuuccccGGGCCuaGGCCg- -3'
miRNA:   3'- caCCCGUUGGGGu------------CCCGGcgCUGGau -5'
33345 5' -63.3 NC_007605.1 + 21960 0.66 0.541967
Target:  5'- -cGGGCGAUCCCccuccacuuccccGGGCCuaGGCCg- -3'
miRNA:   3'- caCCCGUUGGGGu------------CCCGGcgCUGGau -5'
33345 5' -63.3 NC_007605.1 + 28098 0.66 0.541967
Target:  5'- -cGGGCGAUCCCccuccacuuccccGGGCCuaGGCCg- -3'
miRNA:   3'- caCCCGUUGGGGu------------CCCGGcgCUGGau -5'
33345 5' -63.3 NC_007605.1 + 25029 0.66 0.541967
Target:  5'- -cGGGCGAUCCCccuccacuuccccGGGCCuaGGCCg- -3'
miRNA:   3'- caCCCGUUGGGGu------------CCCGGcgCUGGau -5'
33345 5' -63.3 NC_007605.1 + 12753 0.66 0.541967
Target:  5'- -cGGGCGAUCCCccuccacuuccccGGGCCuaGGCCg- -3'
miRNA:   3'- caCCCGUUGGGGu------------CCCGGcgCUGGau -5'
33345 5' -63.3 NC_007605.1 + 31166 0.66 0.541967
Target:  5'- -cGGGCGAUCCCccuccacuuccccGGGCCuaGGCCg- -3'
miRNA:   3'- caCCCGUUGGGGu------------CCCGGcgCUGGau -5'
33345 5' -63.3 NC_007605.1 + 171597 0.67 0.535302
Target:  5'- -gGGGCuuGGCUggcgcggCCGGGGgCGCGACCg- -3'
miRNA:   3'- caCCCG--UUGG-------GGUCCCgGCGCUGGau -5'
33345 5' -63.3 NC_007605.1 + 171059 0.67 0.535302
Target:  5'- -gGGGCuuGGCUggcgcggCCGGGGgCGCGACCg- -3'
miRNA:   3'- caCCCG--UUGG-------GGUCCCgGCGCUGGau -5'
33345 5' -63.3 NC_007605.1 + 170537 0.67 0.535302
Target:  5'- -gGGGCuuGGCUggcgcggCCGGGGgCGCGACCg- -3'
miRNA:   3'- caCCCG--UUGG-------GGUCCCgGCGCUGGau -5'
33345 5' -63.3 NC_007605.1 + 169999 0.67 0.535302
Target:  5'- -gGGGCuuGGCUggcgcggCCGGGGgCGCGACCg- -3'
miRNA:   3'- caCCCG--UUGG-------GGUCCCgGCGCUGGau -5'
33345 5' -63.3 NC_007605.1 + 157439 0.67 0.517362
Target:  5'- -gGGGguGCuCCCGcGGGCCGCGGa--- -3'
miRNA:   3'- caCCCguUG-GGGU-CCCGGCGCUggau -5'
33345 5' -63.3 NC_007605.1 + 58058 0.67 0.517362
Target:  5'- -gGGGCcGCggaggCCGGGGCCGCGgagGCCg- -3'
miRNA:   3'- caCCCGuUGg----GGUCCCGGCGC---UGGau -5'
33345 5' -63.3 NC_007605.1 + 58088 0.67 0.517362
Target:  5'- -gGGGCcGCggaggCCGGGGCCGCGgagGCCg- -3'
miRNA:   3'- caCCCGuUGg----GGUCCCGGCGC---UGGau -5'
33345 5' -63.3 NC_007605.1 + 64466 0.67 0.508017
Target:  5'- -aGGGCAGCCCUgcagcGGGCCa-GGCCg- -3'
miRNA:   3'- caCCCGUUGGGGu----CCCGGcgCUGGau -5'
33345 5' -63.3 NC_007605.1 + 65344 0.67 0.502444
Target:  5'- aGUGGGCGuugcagGCCUCcuucaaaaggaugaaGGGGCUGCcGGCCUu -3'
miRNA:   3'- -CACCCGU------UGGGG---------------UCCCGGCG-CUGGAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.