miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33351 5' -53.8 NC_007605.1 + 90313 0.66 0.942129
Target:  5'- cGGGGCAgCCaCuGGUGCAGGc-UGUGGa -3'
miRNA:   3'- -UUCCGUgGG-GuCCAUGUCCaaACAUU- -5'
33351 5' -53.8 NC_007605.1 + 151583 0.66 0.937244
Target:  5'- cGAGGCccugGCCguggCCAGGUACGGGcugGUGGg -3'
miRNA:   3'- -UUCCG----UGG----GGUCCAUGUCCaaaCAUU- -5'
33351 5' -53.8 NC_007605.1 + 108157 0.66 0.937244
Target:  5'- -cGGguCCgCCGGGUucuCAGGggUGUAGu -3'
miRNA:   3'- uuCCguGG-GGUCCAu--GUCCaaACAUU- -5'
33351 5' -53.8 NC_007605.1 + 82111 0.67 0.915138
Target:  5'- -cGGUACCCCAGGUGCccGGa------ -3'
miRNA:   3'- uuCCGUGGGGUCCAUGu-CCaaacauu -5'
33351 5' -53.8 NC_007605.1 + 160134 0.67 0.90897
Target:  5'- -cGGCACCgCCAGGUgguuACAGGagacGUGGg -3'
miRNA:   3'- uuCCGUGG-GGUCCA----UGUCCaaa-CAUU- -5'
33351 5' -53.8 NC_007605.1 + 131563 0.67 0.902549
Target:  5'- aGGGGCACCUuccaaaaaUAGGgaacagGCAGGUUUGa-- -3'
miRNA:   3'- -UUCCGUGGG--------GUCCa-----UGUCCAAACauu -5'
33351 5' -53.8 NC_007605.1 + 112068 0.67 0.902549
Target:  5'- cAGGCACCagggAGGUcCAGGUUUGg-- -3'
miRNA:   3'- uUCCGUGGgg--UCCAuGUCCAAACauu -5'
33351 5' -53.8 NC_007605.1 + 90713 0.68 0.888957
Target:  5'- aAAGGCACCU--GGUAUGGGUcaggUGUAAa -3'
miRNA:   3'- -UUCCGUGGGguCCAUGUCCAa---ACAUU- -5'
33351 5' -53.8 NC_007605.1 + 68970 0.7 0.788729
Target:  5'- cAGGC-CCCCAGGgACAGGUg----- -3'
miRNA:   3'- uUCCGuGGGGUCCaUGUCCAaacauu -5'
33351 5' -53.8 NC_007605.1 + 107042 0.76 0.460702
Target:  5'- aGGGGUACCCCAGGUugGGGaacauggcgGUGAu -3'
miRNA:   3'- -UUCCGUGGGGUCCAugUCCaaa------CAUU- -5'
33351 5' -53.8 NC_007605.1 + 107552 1.03 0.008593
Target:  5'- cAAGGCACCCCAGGUACAGGUUUGUAAc -3'
miRNA:   3'- -UUCCGUGGGGUCCAUGUCCAAACAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.