miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33369 3' -47.3 NC_007605.1 + 4393 0.68 0.99633
Target:  5'- -gGCCUGGUGACcugccUGGUGGagaugGCc -3'
miRNA:   3'- ugUGGACCACUG-----AUCACCa----CGc -5'
33369 3' -47.3 NC_007605.1 + 6664 0.68 0.99633
Target:  5'- cCAUCUGGUGGCgcGGUcGGUGUu -3'
miRNA:   3'- uGUGGACCACUGa-UCA-CCACGc -5'
33369 3' -47.3 NC_007605.1 + 10964 0.78 0.720204
Target:  5'- -gGCCgGGUGACUGGUGGgggGCa -3'
miRNA:   3'- ugUGGaCCACUGAUCACCa--CGc -5'
33369 3' -47.3 NC_007605.1 + 14089 0.68 0.99691
Target:  5'- -gGCCUGGUGAC-AG-GGcGCGc -3'
miRNA:   3'- ugUGGACCACUGaUCaCCaCGC- -5'
33369 3' -47.3 NC_007605.1 + 14830 0.67 0.998216
Target:  5'- -uGCCUGG-GugUGGUGGaGUGu -3'
miRNA:   3'- ugUGGACCaCugAUCACCaCGC- -5'
33369 3' -47.3 NC_007605.1 + 14890 0.69 0.991937
Target:  5'- -aACCUGGgGGCUAGUcugGGUGgGa -3'
miRNA:   3'- ugUGGACCaCUGAUCA---CCACgC- -5'
33369 3' -47.3 NC_007605.1 + 17157 0.68 0.99691
Target:  5'- -gGCCUGGUGAC-AG-GGcGCGc -3'
miRNA:   3'- ugUGGACCACUGaUCaCCaCGC- -5'
33369 3' -47.3 NC_007605.1 + 17899 0.67 0.998216
Target:  5'- -uGCCUGG-GugUGGUGGaGUGu -3'
miRNA:   3'- ugUGGACCaCugAUCACCaCGC- -5'
33369 3' -47.3 NC_007605.1 + 17959 0.69 0.993046
Target:  5'- -aACCUGG-GGCUAGUcugGGUGgGa -3'
miRNA:   3'- ugUGGACCaCUGAUCA---CCACgC- -5'
33369 3' -47.3 NC_007605.1 + 20226 0.68 0.99691
Target:  5'- -gGCCUGGUGAC-AG-GGcGCGc -3'
miRNA:   3'- ugUGGACCACUGaUCaCCaCGC- -5'
33369 3' -47.3 NC_007605.1 + 20968 0.67 0.998216
Target:  5'- -uGCCUGG-GugUGGUGGaGUGu -3'
miRNA:   3'- ugUGGACCaCugAUCACCaCGC- -5'
33369 3' -47.3 NC_007605.1 + 21027 0.69 0.991937
Target:  5'- -aACCUGGgGGCUAGUcugGGUGgGa -3'
miRNA:   3'- ugUGGACCaCUGAUCA---CCACgC- -5'
33369 3' -47.3 NC_007605.1 + 23295 0.68 0.99691
Target:  5'- -gGCCUGGUGAC-AG-GGcGCGc -3'
miRNA:   3'- ugUGGACCACUGaUCaCCaCGC- -5'
33369 3' -47.3 NC_007605.1 + 24037 0.67 0.998216
Target:  5'- -uGCCUGG-GugUGGUGGaGUGu -3'
miRNA:   3'- ugUGGACCaCugAUCACCaCGC- -5'
33369 3' -47.3 NC_007605.1 + 24096 0.69 0.991937
Target:  5'- -aACCUGGgGGCUAGUcugGGUGgGa -3'
miRNA:   3'- ugUGGACCaCUGAUCA---CCACgC- -5'
33369 3' -47.3 NC_007605.1 + 26364 0.68 0.99691
Target:  5'- -gGCCUGGUGAC-AG-GGcGCGc -3'
miRNA:   3'- ugUGGACCACUGaUCaCCaCGC- -5'
33369 3' -47.3 NC_007605.1 + 27106 0.67 0.998216
Target:  5'- -uGCCUGG-GugUGGUGGaGUGu -3'
miRNA:   3'- ugUGGACCaCugAUCACCaCGC- -5'
33369 3' -47.3 NC_007605.1 + 27165 0.69 0.991937
Target:  5'- -aACCUGGgGGCUAGUcugGGUGgGa -3'
miRNA:   3'- ugUGGACCaCUGAUCA---CCACgC- -5'
33369 3' -47.3 NC_007605.1 + 29433 0.68 0.99691
Target:  5'- -gGCCUGGUGAC-AG-GGcGCGc -3'
miRNA:   3'- ugUGGACCACUGaUCaCCaCGC- -5'
33369 3' -47.3 NC_007605.1 + 30174 0.67 0.998216
Target:  5'- -uGCCUGG-GugUGGUGGaGUGu -3'
miRNA:   3'- ugUGGACCaCugAUCACCaCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.