miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33369 3' -47.3 NC_007605.1 + 108869 0.67 0.998798
Target:  5'- aGCACCUGGUaGAagUAGUuGUGCc -3'
miRNA:   3'- -UGUGGACCA-CUg-AUCAcCACGc -5'
33369 3' -47.3 NC_007605.1 + 121140 0.68 0.995662
Target:  5'- gUugCUGGUGGCUG--GGUGCc -3'
miRNA:   3'- uGugGACCACUGAUcaCCACGc -5'
33369 3' -47.3 NC_007605.1 + 4393 0.68 0.99633
Target:  5'- -gGCCUGGUGACcugccUGGUGGagaugGCc -3'
miRNA:   3'- ugUGGACCACUG-----AUCACCa----CGc -5'
33369 3' -47.3 NC_007605.1 + 63604 0.68 0.99691
Target:  5'- gGCGCCgggGGUGGC-GGUGGaguaUGCu -3'
miRNA:   3'- -UGUGGa--CCACUGaUCACC----ACGc -5'
33369 3' -47.3 NC_007605.1 + 120317 0.68 0.997366
Target:  5'- gGCACCUccGGgagGGCcaacucgUAGUGGUGCc -3'
miRNA:   3'- -UGUGGA--CCa--CUG-------AUCACCACGc -5'
33369 3' -47.3 NC_007605.1 + 76241 0.67 0.997845
Target:  5'- cCACCUGGcuucUGACcGG-GGUGCu -3'
miRNA:   3'- uGUGGACC----ACUGaUCaCCACGc -5'
33369 3' -47.3 NC_007605.1 + 137570 0.67 0.998216
Target:  5'- -gGCCU-GUGACUGgugcuuGUGGUGUGg -3'
miRNA:   3'- ugUGGAcCACUGAU------CACCACGC- -5'
33369 3' -47.3 NC_007605.1 + 78165 0.67 0.998531
Target:  5'- cACugCUGGgguggGGCUGGUGGcauuUGgGg -3'
miRNA:   3'- -UGugGACCa----CUGAUCACC----ACgC- -5'
33369 3' -47.3 NC_007605.1 + 78207 0.67 0.998531
Target:  5'- cACugCUGGgguggGGCUGGUGGcauuUGgGg -3'
miRNA:   3'- -UGugGACCa----CUGAUCACC----ACgC- -5'
33369 3' -47.3 NC_007605.1 + 17959 0.69 0.993046
Target:  5'- -aACCUGG-GGCUAGUcugGGUGgGa -3'
miRNA:   3'- ugUGGACCaCUGAUCA---CCACgC- -5'
33369 3' -47.3 NC_007605.1 + 111894 0.69 0.991937
Target:  5'- cACACCUGGUGA--GGUG-UGCc -3'
miRNA:   3'- -UGUGGACCACUgaUCACcACGc -5'
33369 3' -47.3 NC_007605.1 + 33303 0.69 0.991937
Target:  5'- -aACCUGGgGGCUAGUcugGGUGgGa -3'
miRNA:   3'- ugUGGACCaCUGAUCA---CCACgC- -5'
33369 3' -47.3 NC_007605.1 + 65290 0.75 0.873383
Target:  5'- -uGCCUGGUGAaugcgccuCUGGcGGUGCGg -3'
miRNA:   3'- ugUGGACCACU--------GAUCaCCACGC- -5'
33369 3' -47.3 NC_007605.1 + 77592 0.73 0.928093
Target:  5'- -gGCCUGacgcuUGGCUGGUGGUGCc -3'
miRNA:   3'- ugUGGACc----ACUGAUCACCACGc -5'
33369 3' -47.3 NC_007605.1 + 49124 0.73 0.93898
Target:  5'- cCACCUGGUGAgcGGU-GUGCGg -3'
miRNA:   3'- uGUGGACCACUgaUCAcCACGC- -5'
33369 3' -47.3 NC_007605.1 + 14890 0.69 0.991937
Target:  5'- -aACCUGGgGGCUAGUcugGGUGgGa -3'
miRNA:   3'- ugUGGACCaCUGAUCA---CCACgC- -5'
33369 3' -47.3 NC_007605.1 + 21027 0.69 0.991937
Target:  5'- -aACCUGGgGGCUAGUcugGGUGgGa -3'
miRNA:   3'- ugUGGACCaCUGAUCA---CCACgC- -5'
33369 3' -47.3 NC_007605.1 + 24096 0.69 0.991937
Target:  5'- -aACCUGGgGGCUAGUcugGGUGgGa -3'
miRNA:   3'- ugUGGACCaCUGAUCA---CCACgC- -5'
33369 3' -47.3 NC_007605.1 + 27165 0.69 0.991937
Target:  5'- -aACCUGGgGGCUAGUcugGGUGgGa -3'
miRNA:   3'- ugUGGACCaCUGAUCA---CCACgC- -5'
33369 3' -47.3 NC_007605.1 + 30234 0.69 0.991937
Target:  5'- -aACCUGGgGGCUAGUcugGGUGgGa -3'
miRNA:   3'- ugUGGACCaCUGAUCA---CCACgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.