Results 21 - 40 of 128 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33372 | 3' | -36.5 | NC_007605.1 | + | 53986 | 0.66 | 1 |
Target: 5'- -aGUC-AGGAggUAcauGGGCCACUg -3' miRNA: 3'- gaUAGuUCCUuuGU---UUUGGUGA- -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 129704 | 0.66 | 1 |
Target: 5'- cCUA-CAAGGAAACcuaGAGGCUAUg -3' miRNA: 3'- -GAUaGUUCCUUUG---UUUUGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 18828 | 0.66 | 1 |
Target: 5'- --uUCAGGGGcAGCAGGcucACCACc -3' miRNA: 3'- gauAGUUCCU-UUGUUU---UGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 15759 | 0.66 | 1 |
Target: 5'- --uUCAGGGGcAGCAGGcucACCACc -3' miRNA: 3'- gauAGUUCCU-UUGUUU---UGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 10097 | 0.66 | 1 |
Target: 5'- ----aAAGGAAuuuACAAAGCCAUg -3' miRNA: 3'- gauagUUCCUU---UGUUUUGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 71469 | 0.66 | 1 |
Target: 5'- cCUGggauGGGGAGCGGAgccccGCCGCUg -3' miRNA: 3'- -GAUagu-UCCUUUGUUU-----UGGUGA- -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 12690 | 0.66 | 1 |
Target: 5'- --uUCAGGGGcAGCAGGcucACCACc -3' miRNA: 3'- gauAGUUCCU-UUGUUU---UGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 56738 | 0.66 | 1 |
Target: 5'- --uUCAGGGAAAaacuGGCCAUg -3' miRNA: 3'- gauAGUUCCUUUguu-UUGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 17394 | 0.66 | 1 |
Target: 5'- --cUCAcGGGggGCGucuACCACUu -3' miRNA: 3'- gauAGU-UCCuuUGUuu-UGGUGA- -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 24965 | 0.66 | 1 |
Target: 5'- --uUCAGGGGcAGCAGGcucACCACc -3' miRNA: 3'- gauAGUUCCU-UUGUUU---UGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 21897 | 0.66 | 1 |
Target: 5'- --uUCAGGGGcAGCAGGcucACCACc -3' miRNA: 3'- gauAGUUCCU-UUGUUU---UGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 49639 | 0.66 | 1 |
Target: 5'- -gGUCAgguggcGGGGGACAAccCCACg -3' miRNA: 3'- gaUAGU------UCCUUUGUUuuGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 34172 | 0.66 | 1 |
Target: 5'- --uUCAGGGGcAGCAGGcucACCACc -3' miRNA: 3'- gauAGUUCCU-UUGUUU---UGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 31103 | 0.66 | 1 |
Target: 5'- --uUCAGGGGcAGCAGGcucACCACc -3' miRNA: 3'- gauAGUUCCU-UUGUUU---UGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 28034 | 0.66 | 1 |
Target: 5'- --uUCAGGGGcAGCAGGcucACCACc -3' miRNA: 3'- gauAGUUCCU-UUGUUU---UGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 34545 | 0.67 | 1 |
Target: 5'- --cUCAGGGAucgugGACucGGCCACa -3' miRNA: 3'- gauAGUUCCU-----UUGuuUUGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 102049 | 0.67 | 1 |
Target: 5'- aUGUCAGGGu-GCAGAgggugGCCAUg -3' miRNA: 3'- gAUAGUUCCuuUGUUU-----UGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 129916 | 0.67 | 1 |
Target: 5'- uCUAUgAGGGucGCAuuuGCCACa -3' miRNA: 3'- -GAUAgUUCCuuUGUuu-UGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 102025 | 0.67 | 1 |
Target: 5'- -cAUgGAGGAAAUAu-ACCACa -3' miRNA: 3'- gaUAgUUCCUUUGUuuUGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 104316 | 0.67 | 1 |
Target: 5'- ---aCAAGGGAGCcuGACCAa- -3' miRNA: 3'- gauaGUUCCUUUGuuUUGGUga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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