miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33372 3' -36.5 NC_007605.1 + 143197 0.66 1
Target:  5'- --uUCAuGGGggGgGAGGCCGCc -3'
miRNA:   3'- gauAGU-UCCuuUgUUUUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 53986 0.66 1
Target:  5'- -aGUC-AGGAggUAcauGGGCCACUg -3'
miRNA:   3'- gaUAGuUCCUuuGU---UUUGGUGA- -5'
33372 3' -36.5 NC_007605.1 + 123696 0.66 1
Target:  5'- uCUAUCGgaaaacgcgGGGAAAacAGACCGCa -3'
miRNA:   3'- -GAUAGU---------UCCUUUguUUUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 157995 0.66 1
Target:  5'- -cGUCAuagaaAGGGGACAuuuCCACa -3'
miRNA:   3'- gaUAGU-----UCCUUUGUuuuGGUGa -5'
33372 3' -36.5 NC_007605.1 + 40382 0.66 1
Target:  5'- --uUCAuGGGggGgGAGGCCGCc -3'
miRNA:   3'- gauAGU-UCCuuUgUUUUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 49639 0.66 1
Target:  5'- -gGUCAgguggcGGGGGACAAccCCACg -3'
miRNA:   3'- gaUAGU------UCCUUUGUUuuGGUGa -5'
33372 3' -36.5 NC_007605.1 + 92160 0.66 1
Target:  5'- cCUGUCuuGGA--CGAGACCAUa -3'
miRNA:   3'- -GAUAGuuCCUuuGUUUUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 31103 0.66 1
Target:  5'- --uUCAGGGGcAGCAGGcucACCACc -3'
miRNA:   3'- gauAGUUCCU-UUGUUU---UGGUGa -5'
33372 3' -36.5 NC_007605.1 + 170695 0.66 1
Target:  5'- -gAUCGGGGggGuCGGGgggcGCCGCg -3'
miRNA:   3'- gaUAGUUCCuuU-GUUU----UGGUGa -5'
33372 3' -36.5 NC_007605.1 + 28034 0.66 1
Target:  5'- --uUCAGGGGcAGCAGGcucACCACc -3'
miRNA:   3'- gauAGUUCCU-UUGUUU---UGGUGa -5'
33372 3' -36.5 NC_007605.1 + 18828 0.66 1
Target:  5'- --uUCAGGGGcAGCAGGcucACCACc -3'
miRNA:   3'- gauAGUUCCU-UUGUUU---UGGUGa -5'
33372 3' -36.5 NC_007605.1 + 12690 0.66 1
Target:  5'- --uUCAGGGGcAGCAGGcucACCACc -3'
miRNA:   3'- gauAGUUCCU-UUGUUU---UGGUGa -5'
33372 3' -36.5 NC_007605.1 + 171233 0.66 1
Target:  5'- -gAUCGGGGggGuCGGGgggcGCCGCg -3'
miRNA:   3'- gaUAGUUCCuuU-GUUU----UGGUGa -5'
33372 3' -36.5 NC_007605.1 + 24965 0.66 1
Target:  5'- --uUCAGGGGcAGCAGGcucACCACc -3'
miRNA:   3'- gauAGUUCCU-UUGUUU---UGGUGa -5'
33372 3' -36.5 NC_007605.1 + 122307 0.66 1
Target:  5'- uUGUCGgcGGGAuuCGGGGCCAgCUg -3'
miRNA:   3'- gAUAGU--UCCUuuGUUUUGGU-GA- -5'
33372 3' -36.5 NC_007605.1 + 10097 0.66 1
Target:  5'- ----aAAGGAAuuuACAAAGCCAUg -3'
miRNA:   3'- gauagUUCCUU---UGUUUUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 21897 0.66 1
Target:  5'- --uUCAGGGGcAGCAGGcucACCACc -3'
miRNA:   3'- gauAGUUCCU-UUGUUU---UGGUGa -5'
33372 3' -36.5 NC_007605.1 + 15759 0.66 1
Target:  5'- --uUCAGGGGcAGCAGGcucACCACc -3'
miRNA:   3'- gauAGUUCCU-UUGUUU---UGGUGa -5'
33372 3' -36.5 NC_007605.1 + 170173 0.66 1
Target:  5'- -gAUCGGGGggGuCGGGgggcGCCGCg -3'
miRNA:   3'- gaUAGUUCCuuU-GUUU----UGGUGa -5'
33372 3' -36.5 NC_007605.1 + 47143 0.66 1
Target:  5'- -aGUCGAGGAuACGGGcGCCAg- -3'
miRNA:   3'- gaUAGUUCCUuUGUUU-UGGUga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.