miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33372 3' -36.5 NC_007605.1 + 507 0.71 1
Target:  5'- uCUGUgCGGGGggGCuggGGGGCCGCg -3'
miRNA:   3'- -GAUA-GUUCCuuUG---UUUUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 1044 0.71 1
Target:  5'- uCUGUgCGGGGggGCuggGGGGCCGCg -3'
miRNA:   3'- -GAUA-GUUCCuuUG---UUUUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 1567 0.71 1
Target:  5'- uCUGUgCGGGGggGCuggGGGGCCGCg -3'
miRNA:   3'- -GAUA-GUUCCuuUG---UUUUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 2104 0.71 1
Target:  5'- uCUGUgCGGGGggGCuggGGGGCCGCg -3'
miRNA:   3'- -GAUA-GUUCCuuUG---UUUUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 2515 0.68 1
Target:  5'- ---gCAGGGAcACAcGAACCGCUc -3'
miRNA:   3'- gauaGUUCCUuUGU-UUUGGUGA- -5'
33372 3' -36.5 NC_007605.1 + 3586 0.68 1
Target:  5'- cCUGUCAcaccccaccguGGGAAGCAAGGagCACUu -3'
miRNA:   3'- -GAUAGU-----------UCCUUUGUUUUg-GUGA- -5'
33372 3' -36.5 NC_007605.1 + 6534 0.66 1
Target:  5'- aUAUCAAaGAAGCcccugaAAGGCCACUc -3'
miRNA:   3'- gAUAGUUcCUUUG------UUUUGGUGA- -5'
33372 3' -36.5 NC_007605.1 + 10097 0.66 1
Target:  5'- ----aAAGGAAuuuACAAAGCCAUg -3'
miRNA:   3'- gauagUUCCUU---UGUUUUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 12690 0.66 1
Target:  5'- --uUCAGGGGcAGCAGGcucACCACc -3'
miRNA:   3'- gauAGUUCCU-UUGUUU---UGGUGa -5'
33372 3' -36.5 NC_007605.1 + 13980 0.66 1
Target:  5'- ---gCAGGuGAACAAGACCAUg -3'
miRNA:   3'- gauaGUUCcUUUGUUUUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 14303 0.76 0.999999
Target:  5'- uUGUCAguucuAGGGAGgGGGACCACUg -3'
miRNA:   3'- gAUAGU-----UCCUUUgUUUUGGUGA- -5'
33372 3' -36.5 NC_007605.1 + 15759 0.66 1
Target:  5'- --uUCAGGGGcAGCAGGcucACCACc -3'
miRNA:   3'- gauAGUUCCU-UUGUUU---UGGUGa -5'
33372 3' -36.5 NC_007605.1 + 17372 0.76 0.999999
Target:  5'- uUGUCAguucuAGGGAGgGGGACCACUg -3'
miRNA:   3'- gAUAGU-----UCCUUUgUUUUGGUGA- -5'
33372 3' -36.5 NC_007605.1 + 17394 0.66 1
Target:  5'- --cUCAcGGGggGCGucuACCACUu -3'
miRNA:   3'- gauAGU-UCCuuUGUuu-UGGUGA- -5'
33372 3' -36.5 NC_007605.1 + 18828 0.66 1
Target:  5'- --uUCAGGGGcAGCAGGcucACCACc -3'
miRNA:   3'- gauAGUUCCU-UUGUUU---UGGUGa -5'
33372 3' -36.5 NC_007605.1 + 20441 0.76 0.999999
Target:  5'- uUGUCAguucuAGGGAGgGGGACCACUg -3'
miRNA:   3'- gAUAGU-----UCCUUUgUUUUGGUGA- -5'
33372 3' -36.5 NC_007605.1 + 20547 0.67 1
Target:  5'- ---cCAGGGggGCAAAuugcgugucugggGCCGCc -3'
miRNA:   3'- gauaGUUCCuuUGUUU-------------UGGUGa -5'
33372 3' -36.5 NC_007605.1 + 21897 0.66 1
Target:  5'- --uUCAGGGGcAGCAGGcucACCACc -3'
miRNA:   3'- gauAGUUCCU-UUGUUU---UGGUGa -5'
33372 3' -36.5 NC_007605.1 + 23510 0.76 0.999999
Target:  5'- uUGUCAguucuAGGGAGgGGGACCACUg -3'
miRNA:   3'- gAUAGU-----UCCUUUgUUUUGGUGA- -5'
33372 3' -36.5 NC_007605.1 + 24965 0.66 1
Target:  5'- --uUCAGGGGcAGCAGGcucACCACc -3'
miRNA:   3'- gauAGUUCCU-UUGUUU---UGGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.