miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33372 3' -36.5 NC_007605.1 + 32214 1.07 0.296642
Target:  5'- uCUAUCAAGGAAACAAAACCACUg -3'
miRNA:   3'- -GAUAGUUCCUUUGUUUUGGUGA- -5'
33372 3' -36.5 NC_007605.1 + 54160 0.85 0.992902
Target:  5'- -gAUCGAGGAGACGAgGGCCACg -3'
miRNA:   3'- gaUAGUUCCUUUGUU-UUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 95043 0.78 0.999988
Target:  5'- --cUCAGGGGccaAGCAAAACCGCg -3'
miRNA:   3'- gauAGUUCCU---UUGUUUUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 107712 0.77 0.999997
Target:  5'- gCUGUCAaucuccaccacgGGGAGGCuAGAGCCACg -3'
miRNA:   3'- -GAUAGU------------UCCUUUG-UUUUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 109727 0.77 0.999997
Target:  5'- aCUAaCGAGGAGACAAAGUCACa -3'
miRNA:   3'- -GAUaGUUCCUUUGUUUUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 14303 0.76 0.999999
Target:  5'- uUGUCAguucuAGGGAGgGGGACCACUg -3'
miRNA:   3'- gAUAGU-----UCCUUUgUUUUGGUGA- -5'
33372 3' -36.5 NC_007605.1 + 32717 0.76 0.999999
Target:  5'- uUGUCAguucuAGGGAGgGGGACCACUg -3'
miRNA:   3'- gAUAGU-----UCCUUUgUUUUGGUGA- -5'
33372 3' -36.5 NC_007605.1 + 29648 0.76 0.999999
Target:  5'- uUGUCAguucuAGGGAGgGGGACCACUg -3'
miRNA:   3'- gAUAGU-----UCCUUUgUUUUGGUGA- -5'
33372 3' -36.5 NC_007605.1 + 26579 0.76 0.999999
Target:  5'- uUGUCAguucuAGGGAGgGGGACCACUg -3'
miRNA:   3'- gAUAGU-----UCCUUUgUUUUGGUGA- -5'
33372 3' -36.5 NC_007605.1 + 23510 0.76 0.999999
Target:  5'- uUGUCAguucuAGGGAGgGGGACCACUg -3'
miRNA:   3'- gAUAGU-----UCCUUUgUUUUGGUGA- -5'
33372 3' -36.5 NC_007605.1 + 20441 0.76 0.999999
Target:  5'- uUGUCAguucuAGGGAGgGGGACCACUg -3'
miRNA:   3'- gAUAGU-----UCCUUUgUUUUGGUGA- -5'
33372 3' -36.5 NC_007605.1 + 17372 0.76 0.999999
Target:  5'- uUGUCAguucuAGGGAGgGGGACCACUg -3'
miRNA:   3'- gAUAGU-----UCCUUUgUUUUGGUGA- -5'
33372 3' -36.5 NC_007605.1 + 125681 0.71 1
Target:  5'- gCUGUCAuGGccAAACAAuGCCACa -3'
miRNA:   3'- -GAUAGUuCC--UUUGUUuUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 139379 0.71 1
Target:  5'- ----gAGGGAAACAuGACCACc -3'
miRNA:   3'- gauagUUCCUUUGUuUUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 44654 0.71 1
Target:  5'- -gGUCAAGGccguggaugcGCAGGACCACg -3'
miRNA:   3'- gaUAGUUCCuu--------UGUUUUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 53986 0.66 1
Target:  5'- -aGUC-AGGAggUAcauGGGCCACUg -3'
miRNA:   3'- gaUAGuUCCUuuGU---UUUGGUGA- -5'
33372 3' -36.5 NC_007605.1 + 96553 0.73 1
Target:  5'- -gGUCGAGGAGGCAguggAGGCCGg- -3'
miRNA:   3'- gaUAGUUCCUUUGU----UUUGGUga -5'
33372 3' -36.5 NC_007605.1 + 96601 0.73 1
Target:  5'- -gGUCGAGGAgguaGugGAGGCCGCc -3'
miRNA:   3'- gaUAGUUCCU----UugUUUUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 106432 0.73 1
Target:  5'- -aGUCGAGGgcGCGuuGACCACg -3'
miRNA:   3'- gaUAGUUCCuuUGUu-UUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 140426 0.74 1
Target:  5'- uCUAUCAgaauaacagGGGAAGCAAGGCCcccuGCUu -3'
miRNA:   3'- -GAUAGU---------UCCUUUGUUUUGG----UGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.