miRNA display CGI


Results 21 - 40 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33372 3' -36.5 NC_007605.1 + 26579 0.76 0.999999
Target:  5'- uUGUCAguucuAGGGAGgGGGACCACUg -3'
miRNA:   3'- gAUAGU-----UCCUUUgUUUUGGUGA- -5'
33372 3' -36.5 NC_007605.1 + 26622 0.66 1
Target:  5'- ----aGAGGAAAUGAcaAGCCACa -3'
miRNA:   3'- gauagUUCCUUUGUU--UUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 27301 0.68 1
Target:  5'- ----gGAGGAAAUAGAgGCCACa -3'
miRNA:   3'- gauagUUCCUUUGUUU-UGGUGa -5'
33372 3' -36.5 NC_007605.1 + 28034 0.66 1
Target:  5'- --uUCAGGGGcAGCAGGcucACCACc -3'
miRNA:   3'- gauAGUUCCU-UUGUUU---UGGUGa -5'
33372 3' -36.5 NC_007605.1 + 29648 0.76 0.999999
Target:  5'- uUGUCAguucuAGGGAGgGGGACCACUg -3'
miRNA:   3'- gAUAGU-----UCCUUUgUUUUGGUGA- -5'
33372 3' -36.5 NC_007605.1 + 31103 0.66 1
Target:  5'- --uUCAGGGGcAGCAGGcucACCACc -3'
miRNA:   3'- gauAGUUCCU-UUGUUU---UGGUGa -5'
33372 3' -36.5 NC_007605.1 + 32214 1.07 0.296642
Target:  5'- uCUAUCAAGGAAACAAAACCACUg -3'
miRNA:   3'- -GAUAGUUCCUUUGUUUUGGUGA- -5'
33372 3' -36.5 NC_007605.1 + 32717 0.76 0.999999
Target:  5'- uUGUCAguucuAGGGAGgGGGACCACUg -3'
miRNA:   3'- gAUAGU-----UCCUUUgUUUUGGUGA- -5'
33372 3' -36.5 NC_007605.1 + 34172 0.66 1
Target:  5'- --uUCAGGGGcAGCAGGcucACCACc -3'
miRNA:   3'- gauAGUUCCU-UUGUUU---UGGUGa -5'
33372 3' -36.5 NC_007605.1 + 34545 0.67 1
Target:  5'- --cUCAGGGAucgugGACucGGCCACa -3'
miRNA:   3'- gauAGUUCCU-----UUGuuUUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 35199 0.66 1
Target:  5'- ----aAGGGggGCAGcggGGCCGCg -3'
miRNA:   3'- gauagUUCCuuUGUU---UUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 36874 0.67 1
Target:  5'- ----gAAGGAGGCAAAACCc-- -3'
miRNA:   3'- gauagUUCCUUUGUUUUGGuga -5'
33372 3' -36.5 NC_007605.1 + 39541 0.69 1
Target:  5'- ---cCAGGGGAGCccAGCCACc -3'
miRNA:   3'- gauaGUUCCUUUGuuUUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 40127 0.7 1
Target:  5'- gCUGUCuuuGGGGACcuGACCAUUg -3'
miRNA:   3'- -GAUAGuu-CCUUUGuuUUGGUGA- -5'
33372 3' -36.5 NC_007605.1 + 40244 0.7 1
Target:  5'- -gGUCcAGGggGCA--GCCGCg -3'
miRNA:   3'- gaUAGuUCCuuUGUuuUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 40382 0.66 1
Target:  5'- --uUCAuGGGggGgGAGGCCGCc -3'
miRNA:   3'- gauAGU-UCCuuUgUUUUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 42049 0.71 1
Target:  5'- aCUGUCAAGGGcauGCAAucCUACg -3'
miRNA:   3'- -GAUAGUUCCUu--UGUUuuGGUGa -5'
33372 3' -36.5 NC_007605.1 + 43029 0.69 1
Target:  5'- aCUGUCAuGGAAAUugcGGGCCugUa -3'
miRNA:   3'- -GAUAGUuCCUUUGu--UUUGGugA- -5'
33372 3' -36.5 NC_007605.1 + 44654 0.71 1
Target:  5'- -gGUCAAGGccguggaugcGCAGGACCACg -3'
miRNA:   3'- gaUAGUUCCuu--------UGUUUUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 46098 0.71 1
Target:  5'- -gGUCccuAGGAAGCGAcgcggGACCACg -3'
miRNA:   3'- gaUAGu--UCCUUUGUU-----UUGGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.