Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33374 | 5' | -45 | NC_007605.1 | + | 6248 | 0.66 | 0.999972 |
Target: 5'- -cAGGGCACACACUCAagcgggguCUCg-- -3' miRNA: 3'- guUCUCGUGUGUGGGU--------GAGaua -5' |
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33374 | 5' | -45 | NC_007605.1 | + | 102194 | 0.66 | 0.999972 |
Target: 5'- cCGAGuGCuACACAgCCGCUCc-- -3' miRNA: 3'- -GUUCuCG-UGUGUgGGUGAGaua -5' |
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33374 | 5' | -45 | NC_007605.1 | + | 22099 | 0.66 | 0.999972 |
Target: 5'- ---cAGCACACGCCCccauUUCUAa -3' miRNA: 3'- guucUCGUGUGUGGGu---GAGAUa -5' |
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33374 | 5' | -45 | NC_007605.1 | + | 164711 | 0.66 | 0.999972 |
Target: 5'- gCGAGGGCGCG-ACCCACg---- -3' miRNA: 3'- -GUUCUCGUGUgUGGGUGagaua -5' |
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33374 | 5' | -45 | NC_007605.1 | + | 100251 | 0.66 | 0.999961 |
Target: 5'- gCAGGGGCACAgCACCaaGCUCc-- -3' miRNA: 3'- -GUUCUCGUGU-GUGGg-UGAGaua -5' |
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33374 | 5' | -45 | NC_007605.1 | + | 245 | 0.66 | 0.999961 |
Target: 5'- cCGGGGGCGCGacCGCCU-CUCUGUc -3' miRNA: 3'- -GUUCUCGUGU--GUGGGuGAGAUA- -5' |
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33374 | 5' | -45 | NC_007605.1 | + | 1843 | 0.66 | 0.999961 |
Target: 5'- cCGGGGGCGCGacCGCCU-CUCUGUc -3' miRNA: 3'- -GUUCUCGUGU--GUGGGuGAGAUA- -5' |
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33374 | 5' | -45 | NC_007605.1 | + | 1305 | 0.66 | 0.999961 |
Target: 5'- cCGGGGGCGCGacCGCCU-CUCUGUc -3' miRNA: 3'- -GUUCUCGUGU--GUGGGuGAGAUA- -5' |
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33374 | 5' | -45 | NC_007605.1 | + | 783 | 0.66 | 0.999961 |
Target: 5'- cCGGGGGCGCGacCGCCU-CUCUGUc -3' miRNA: 3'- -GUUCUCGUGU--GUGGGuGAGAUA- -5' |
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33374 | 5' | -45 | NC_007605.1 | + | 42053 | 0.66 | 0.999961 |
Target: 5'- uCAAGGGCAUGCAauCCUACgggCUGg -3' miRNA: 3'- -GUUCUCGUGUGU--GGGUGa--GAUa -5' |
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33374 | 5' | -45 | NC_007605.1 | + | 40000 | 0.66 | 0.999957 |
Target: 5'- gGAGAGCAUGCggguuccaauugugACCCAC-CUAa -3' miRNA: 3'- gUUCUCGUGUG--------------UGGGUGaGAUa -5' |
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33374 | 5' | -45 | NC_007605.1 | + | 107870 | 0.66 | 0.999946 |
Target: 5'- cCAGGAGaCAgAgGCCCGuCUCUAc -3' miRNA: 3'- -GUUCUC-GUgUgUGGGU-GAGAUa -5' |
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33374 | 5' | -45 | NC_007605.1 | + | 106986 | 0.66 | 0.999927 |
Target: 5'- aGAGGGCcuggguCACGuCCCACUCg-- -3' miRNA: 3'- gUUCUCGu-----GUGU-GGGUGAGaua -5' |
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33374 | 5' | -45 | NC_007605.1 | + | 67952 | 0.67 | 0.999903 |
Target: 5'- cCAAGAGCcacCACACCUGCgccCUGa -3' miRNA: 3'- -GUUCUCGu--GUGUGGGUGa--GAUa -5' |
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33374 | 5' | -45 | NC_007605.1 | + | 153606 | 0.67 | 0.999903 |
Target: 5'- --cGAGCACGCGCCgGCagcgugUCUGc -3' miRNA: 3'- guuCUCGUGUGUGGgUG------AGAUa -5' |
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33374 | 5' | -45 | NC_007605.1 | + | 157668 | 0.67 | 0.999903 |
Target: 5'- -cAGAGauuaccuguUACGCACCCGCUUUGg -3' miRNA: 3'- guUCUC---------GUGUGUGGGUGAGAUa -5' |
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33374 | 5' | -45 | NC_007605.1 | + | 98067 | 0.67 | 0.999871 |
Target: 5'- -cGGAGCACaugcGCACCUACUUc-- -3' miRNA: 3'- guUCUCGUG----UGUGGGUGAGaua -5' |
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33374 | 5' | -45 | NC_007605.1 | + | 111691 | 0.67 | 0.99983 |
Target: 5'- gGGGAGCAgACACCCcacCUCc-- -3' miRNA: 3'- gUUCUCGUgUGUGGGu--GAGaua -5' |
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33374 | 5' | -45 | NC_007605.1 | + | 132782 | 0.67 | 0.999778 |
Target: 5'- aGAGGGCAC-CGCCCAgUUg-- -3' miRNA: 3'- gUUCUCGUGuGUGGGUgAGaua -5' |
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33374 | 5' | -45 | NC_007605.1 | + | 136923 | 0.67 | 0.999778 |
Target: 5'- -cAGGGCcccuGCuACACCCACUCg-- -3' miRNA: 3'- guUCUCG----UG-UGUGGGUGAGaua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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