Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33374 | 5' | -45 | NC_007605.1 | + | 164711 | 0.66 | 0.999972 |
Target: 5'- gCGAGGGCGCG-ACCCACg---- -3' miRNA: 3'- -GUUCUCGUGUgUGGGUGagaua -5' |
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33374 | 5' | -45 | NC_007605.1 | + | 157668 | 0.67 | 0.999903 |
Target: 5'- -cAGAGauuaccuguUACGCACCCGCUUUGg -3' miRNA: 3'- guUCUC---------GUGUGUGGGUGAGAUa -5' |
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33374 | 5' | -45 | NC_007605.1 | + | 153606 | 0.67 | 0.999903 |
Target: 5'- --cGAGCACGCGCCgGCagcgugUCUGc -3' miRNA: 3'- guuCUCGUGUGUGGgUG------AGAUa -5' |
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33374 | 5' | -45 | NC_007605.1 | + | 137056 | 0.69 | 0.999063 |
Target: 5'- --cGGGCACACaggcccccgaaGCCCACUgUGUg -3' miRNA: 3'- guuCUCGUGUG-----------UGGGUGAgAUA- -5' |
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33374 | 5' | -45 | NC_007605.1 | + | 136923 | 0.67 | 0.999778 |
Target: 5'- -cAGGGCcccuGCuACACCCACUCg-- -3' miRNA: 3'- guUCUCG----UG-UGUGGGUGAGaua -5' |
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33374 | 5' | -45 | NC_007605.1 | + | 132782 | 0.67 | 0.999778 |
Target: 5'- aGAGGGCAC-CGCCCAgUUg-- -3' miRNA: 3'- gUUCUCGUGuGUGGGUgAGaua -5' |
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33374 | 5' | -45 | NC_007605.1 | + | 131710 | 0.69 | 0.999042 |
Target: 5'- -cAGAGCAagcggacCACGCCCAUUCg-- -3' miRNA: 3'- guUCUCGU-------GUGUGGGUGAGaua -5' |
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33374 | 5' | -45 | NC_007605.1 | + | 126986 | 0.68 | 0.99963 |
Target: 5'- cCAAGAGaaGCAuCGCCCACUCc-- -3' miRNA: 3'- -GUUCUCg-UGU-GUGGGUGAGaua -5' |
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33374 | 5' | -45 | NC_007605.1 | + | 116804 | 0.73 | 0.973135 |
Target: 5'- uGGGGGCACGCccagaGCCCGCUCc-- -3' miRNA: 3'- gUUCUCGUGUG-----UGGGUGAGaua -5' |
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33374 | 5' | -45 | NC_007605.1 | + | 116394 | 0.73 | 0.978725 |
Target: 5'- gUAAGGGCGCACA-CCACUCc-- -3' miRNA: 3'- -GUUCUCGUGUGUgGGUGAGaua -5' |
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33374 | 5' | -45 | NC_007605.1 | + | 116167 | 0.68 | 0.999402 |
Target: 5'- gGAGAGCAUAgACCaC-CUCUAUc -3' miRNA: 3'- gUUCUCGUGUgUGG-GuGAGAUA- -5' |
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33374 | 5' | -45 | NC_007605.1 | + | 112727 | 0.67 | 0.999778 |
Target: 5'- --cGAGCAUACugCCGCcaCUAUg -3' miRNA: 3'- guuCUCGUGUGugGGUGa-GAUA- -5' |
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33374 | 5' | -45 | NC_007605.1 | + | 111691 | 0.67 | 0.99983 |
Target: 5'- gGGGAGCAgACACCCcacCUCc-- -3' miRNA: 3'- gUUCUCGUgUGUGGGu--GAGaua -5' |
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33374 | 5' | -45 | NC_007605.1 | + | 111275 | 0.72 | 0.990386 |
Target: 5'- -cGGAGCuccuC-CACCCGCUCUAg -3' miRNA: 3'- guUCUCGu---GuGUGGGUGAGAUa -5' |
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33374 | 5' | -45 | NC_007605.1 | + | 107870 | 0.66 | 0.999946 |
Target: 5'- cCAGGAGaCAgAgGCCCGuCUCUAc -3' miRNA: 3'- -GUUCUC-GUgUgUGGGU-GAGAUa -5' |
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33374 | 5' | -45 | NC_007605.1 | + | 106986 | 0.66 | 0.999927 |
Target: 5'- aGAGGGCcuggguCACGuCCCACUCg-- -3' miRNA: 3'- gUUCUCGu-----GUGU-GGGUGAGaua -5' |
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33374 | 5' | -45 | NC_007605.1 | + | 105221 | 0.68 | 0.99963 |
Target: 5'- --cGGGCACACaccACCCAC-CUGg -3' miRNA: 3'- guuCUCGUGUG---UGGGUGaGAUa -5' |
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33374 | 5' | -45 | NC_007605.1 | + | 102194 | 0.66 | 0.999972 |
Target: 5'- cCGAGuGCuACACAgCCGCUCc-- -3' miRNA: 3'- -GUUCuCG-UGUGUgGGUGAGaua -5' |
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33374 | 5' | -45 | NC_007605.1 | + | 101833 | 0.68 | 0.999402 |
Target: 5'- aCGAGAGCGCcucugGCGCCCucgGCUCc-- -3' miRNA: 3'- -GUUCUCGUG-----UGUGGG---UGAGaua -5' |
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33374 | 5' | -45 | NC_007605.1 | + | 100873 | 0.71 | 0.991704 |
Target: 5'- aAAGAGCugGCACCCuGCUUc-- -3' miRNA: 3'- gUUCUCGugUGUGGG-UGAGaua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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