miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33374 5' -45 NC_007605.1 + 10470 0.74 0.966551
Target:  5'- gGAGGGCACuCGCCCACUa--- -3'
miRNA:   3'- gUUCUCGUGuGUGGGUGAgaua -5'
33374 5' -45 NC_007605.1 + 164711 0.66 0.999972
Target:  5'- gCGAGGGCGCG-ACCCACg---- -3'
miRNA:   3'- -GUUCUCGUGUgUGGGUGagaua -5'
33374 5' -45 NC_007605.1 + 102194 0.66 0.999972
Target:  5'- cCGAGuGCuACACAgCCGCUCc-- -3'
miRNA:   3'- -GUUCuCG-UGUGUgGGUGAGaua -5'
33374 5' -45 NC_007605.1 + 6248 0.66 0.999972
Target:  5'- -cAGGGCACACACUCAagcgggguCUCg-- -3'
miRNA:   3'- guUCUCGUGUGUGGGU--------GAGaua -5'
33374 5' -45 NC_007605.1 + 100251 0.66 0.999961
Target:  5'- gCAGGGGCACAgCACCaaGCUCc-- -3'
miRNA:   3'- -GUUCUCGUGU-GUGGg-UGAGaua -5'
33374 5' -45 NC_007605.1 + 107870 0.66 0.999946
Target:  5'- cCAGGAGaCAgAgGCCCGuCUCUAc -3'
miRNA:   3'- -GUUCUC-GUgUgUGGGU-GAGAUa -5'
33374 5' -45 NC_007605.1 + 153606 0.67 0.999903
Target:  5'- --cGAGCACGCGCCgGCagcgugUCUGc -3'
miRNA:   3'- guuCUCGUGUGUGGgUG------AGAUa -5'
33374 5' -45 NC_007605.1 + 67952 0.67 0.999903
Target:  5'- cCAAGAGCcacCACACCUGCgccCUGa -3'
miRNA:   3'- -GUUCUCGu--GUGUGGGUGa--GAUa -5'
33374 5' -45 NC_007605.1 + 112727 0.67 0.999778
Target:  5'- --cGAGCAUACugCCGCcaCUAUg -3'
miRNA:   3'- guuCUCGUGUGugGGUGa-GAUA- -5'
33374 5' -45 NC_007605.1 + 132782 0.67 0.999778
Target:  5'- aGAGGGCAC-CGCCCAgUUg-- -3'
miRNA:   3'- gUUCUCGUGuGUGGGUgAGaua -5'
33374 5' -45 NC_007605.1 + 136923 0.67 0.999778
Target:  5'- -cAGGGCcccuGCuACACCCACUCg-- -3'
miRNA:   3'- guUCUCG----UG-UGUGGGUGAGaua -5'
33374 5' -45 NC_007605.1 + 116394 0.73 0.978725
Target:  5'- gUAAGGGCGCACA-CCACUCc-- -3'
miRNA:   3'- -GUUCUCGUGUGUgGGUGAGaua -5'
33374 5' -45 NC_007605.1 + 111275 0.72 0.990386
Target:  5'- -cGGAGCuccuC-CACCCGCUCUAg -3'
miRNA:   3'- guUCUCGu---GuGUGGGUGAGAUa -5'
33374 5' -45 NC_007605.1 + 7388 0.71 0.994821
Target:  5'- aAGGAuaGCACuCCCACUCUAc -3'
miRNA:   3'- gUUCUcgUGUGuGGGUGAGAUa -5'
33374 5' -45 NC_007605.1 + 137056 0.69 0.999063
Target:  5'- --cGGGCACACaggcccccgaaGCCCACUgUGUg -3'
miRNA:   3'- guuCUCGUGUG-----------UGGGUGAgAUA- -5'
33374 5' -45 NC_007605.1 + 101833 0.68 0.999402
Target:  5'- aCGAGAGCGCcucugGCGCCCucgGCUCc-- -3'
miRNA:   3'- -GUUCUCGUG-----UGUGGG---UGAGaua -5'
33374 5' -45 NC_007605.1 + 8865 0.68 0.999528
Target:  5'- gGAGAGUuCACuGCCCGCUCc-- -3'
miRNA:   3'- gUUCUCGuGUG-UGGGUGAGaua -5'
33374 5' -45 NC_007605.1 + 126986 0.68 0.99963
Target:  5'- cCAAGAGaaGCAuCGCCCACUCc-- -3'
miRNA:   3'- -GUUCUCg-UGU-GUGGGUGAGaua -5'
33374 5' -45 NC_007605.1 + 22099 0.66 0.999972
Target:  5'- ---cAGCACACGCCCccauUUCUAa -3'
miRNA:   3'- guucUCGUGUGUGGGu---GAGAUa -5'
33374 5' -45 NC_007605.1 + 35855 0.75 0.934781
Target:  5'- gAGGGGCAgGCGCUgACUCUGUg -3'
miRNA:   3'- gUUCUCGUgUGUGGgUGAGAUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.