Results 21 - 40 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
33376 | 3' | -47.4 | NC_007605.1 | + | 12225 | 0.66 | 0.999155 |
Target: 5'- gCUGAGGCcggGGUCCaGGgggaCCCGa -3' miRNA: 3'- aGAUUCCGa--UCAGG-CUag--GGGC- -5' |
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33376 | 3' | -47.4 | NC_007605.1 | + | 24501 | 0.66 | 0.999155 |
Target: 5'- gCUGAGGCcggGGUCCaGGgggaCCCGa -3' miRNA: 3'- aGAUUCCGa--UCAGG-CUag--GGGC- -5' |
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33376 | 3' | -47.4 | NC_007605.1 | + | 99399 | 0.66 | 0.999443 |
Target: 5'- aCUGGGGCUGGUggccugggaggugCUGAggcccgUCCCCu -3' miRNA: 3'- aGAUUCCGAUCA-------------GGCU------AGGGGc -5' |
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33376 | 3' | -47.4 | NC_007605.1 | + | 31240 | 0.66 | 0.999658 |
Target: 5'- gUCUGggGGGCUGagggcgaccGUCCGggCCCgGa -3' miRNA: 3'- -AGAU--UCCGAU---------CAGGCuaGGGgC- -5' |
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33376 | 3' | -47.4 | NC_007605.1 | + | 91941 | 0.66 | 0.999658 |
Target: 5'- --aGAGGCcAGggCCGAggCCCCGc -3' miRNA: 3'- agaUUCCGaUCa-GGCUa-GGGGC- -5' |
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33376 | 3' | -47.4 | NC_007605.1 | + | 27570 | 0.66 | 0.999155 |
Target: 5'- gCUGAGGCcggGGUCCaGGgggaCCCGa -3' miRNA: 3'- aGAUUCCGa--UCAGG-CUag--GGGC- -5' |
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33376 | 3' | -47.4 | NC_007605.1 | + | 27778 | 0.66 | 0.999455 |
Target: 5'- gUCggcuGGGCUGG-CCGAg-CCCGg -3' miRNA: 3'- -AGau--UCCGAUCaGGCUagGGGC- -5' |
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33376 | 3' | -47.4 | NC_007605.1 | + | 130849 | 0.66 | 0.999567 |
Target: 5'- uUCgauuGGGCUGGUCUGAgcaaggugaUCUCUGa -3' miRNA: 3'- -AGau--UCCGAUCAGGCU---------AGGGGC- -5' |
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33376 | 3' | -47.4 | NC_007605.1 | + | 47977 | 0.66 | 0.999455 |
Target: 5'- --aGGGGCUGGUCUGugaCCUGg -3' miRNA: 3'- agaUUCCGAUCAGGCuagGGGC- -5' |
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33376 | 3' | -47.4 | NC_007605.1 | + | 137141 | 0.67 | 0.998957 |
Target: 5'- -aUGAGGCUGaaaUCCGuaaggCCCCGa -3' miRNA: 3'- agAUUCCGAUc--AGGCua---GGGGC- -5' |
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33376 | 3' | -47.4 | NC_007605.1 | + | 68701 | 0.67 | 0.998721 |
Target: 5'- gUCUGGGGCguuguuggAGUCCuGUgCCCa -3' miRNA: 3'- -AGAUUCCGa-------UCAGGcUAgGGGc -5' |
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33376 | 3' | -47.4 | NC_007605.1 | + | 105740 | 0.67 | 0.998442 |
Target: 5'- -aUAGGGCUGGaaaUCUGAgCCCCc -3' miRNA: 3'- agAUUCCGAUC---AGGCUaGGGGc -5' |
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33376 | 3' | -47.4 | NC_007605.1 | + | 164008 | 0.67 | 0.998442 |
Target: 5'- cCUGuGGCccgcgUAG-CCGGUCCCCa -3' miRNA: 3'- aGAUuCCG-----AUCaGGCUAGGGGc -5' |
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33376 | 3' | -47.4 | NC_007605.1 | + | 137902 | 0.67 | 0.998957 |
Target: 5'- --aAGGGCaguuGUCC-AUCCCCGg -3' miRNA: 3'- agaUUCCGau--CAGGcUAGGGGC- -5' |
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33376 | 3' | -47.4 | NC_007605.1 | + | 2651 | 0.67 | 0.99825 |
Target: 5'- aUCgcuGGGCUGGUacuaccagaccgccaCCGG-CCCCGg -3' miRNA: 3'- -AGau-UCCGAUCA---------------GGCUaGGGGC- -5' |
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33376 | 3' | -47.4 | NC_007605.1 | + | 128018 | 0.67 | 0.997683 |
Target: 5'- cUCUAAGGCUGGugcccaaUCCGGacuugcugccUCUCCa -3' miRNA: 3'- -AGAUUCCGAUC-------AGGCU----------AGGGGc -5' |
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33376 | 3' | -47.4 | NC_007605.1 | + | 85176 | 0.67 | 0.998442 |
Target: 5'- cCUGAGGUgccacCCGuUCCCCGg -3' miRNA: 3'- aGAUUCCGauca-GGCuAGGGGC- -5' |
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33376 | 3' | -47.4 | NC_007605.1 | + | 137080 | 0.68 | 0.994672 |
Target: 5'- aCUGuguGGCcgAGUCCacGAUCCCUGa -3' miRNA: 3'- aGAUu--CCGa-UCAGG--CUAGGGGC- -5' |
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33376 | 3' | -47.4 | NC_007605.1 | + | 13131 | 0.68 | 0.996697 |
Target: 5'- cUCUGGGGcCUGGgccCCGAggguggcUCCCCu -3' miRNA: 3'- -AGAUUCC-GAUCa--GGCU-------AGGGGc -5' |
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33376 | 3' | -47.4 | NC_007605.1 | + | 72644 | 0.68 | 0.997275 |
Target: 5'- aCUGcacguGGGCUGG-CCGGcCCCCa -3' miRNA: 3'- aGAU-----UCCGAUCaGGCUaGGGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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