miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33376 3' -47.4 NC_007605.1 + 164008 0.67 0.998442
Target:  5'- cCUGuGGCccgcgUAG-CCGGUCCCCa -3'
miRNA:   3'- aGAUuCCG-----AUCaGGCUAGGGGc -5'
33376 3' -47.4 NC_007605.1 + 153052 0.7 0.987336
Target:  5'- --gAAGGCUGG-CaaaGAUCCCCa -3'
miRNA:   3'- agaUUCCGAUCaGg--CUAGGGGc -5'
33376 3' -47.4 NC_007605.1 + 149638 0.72 0.95656
Target:  5'- --aAGGGCUAcGUCCGAgUCUCCGu -3'
miRNA:   3'- agaUUCCGAU-CAGGCU-AGGGGC- -5'
33376 3' -47.4 NC_007605.1 + 140125 1.07 0.0215
Target:  5'- cUCUAAGGCUAGUCCGAUCCCCGg -3'
miRNA:   3'- -AGAUUCCGAUCAGGCUAGGGGC- -5'
33376 3' -47.4 NC_007605.1 + 137902 0.67 0.998957
Target:  5'- --aAGGGCaguuGUCC-AUCCCCGg -3'
miRNA:   3'- agaUUCCGau--CAGGcUAGGGGC- -5'
33376 3' -47.4 NC_007605.1 + 137141 0.67 0.998957
Target:  5'- -aUGAGGCUGaaaUCCGuaaggCCCCGa -3'
miRNA:   3'- agAUUCCGAUc--AGGCua---GGGGC- -5'
33376 3' -47.4 NC_007605.1 + 137080 0.68 0.994672
Target:  5'- aCUGuguGGCcgAGUCCacGAUCCCUGa -3'
miRNA:   3'- aGAUu--CCGa-UCAGG--CUAGGGGC- -5'
33376 3' -47.4 NC_007605.1 + 136492 0.66 0.999319
Target:  5'- cCUGGGGCcGGagCGGUcgCCCCGg -3'
miRNA:   3'- aGAUUCCGaUCagGCUA--GGGGC- -5'
33376 3' -47.4 NC_007605.1 + 130849 0.66 0.999567
Target:  5'- uUCgauuGGGCUGGUCUGAgcaaggugaUCUCUGa -3'
miRNA:   3'- -AGau--UCCGAUCAGGCU---------AGGGGC- -5'
33376 3' -47.4 NC_007605.1 + 128018 0.67 0.997683
Target:  5'- cUCUAAGGCUGGugcccaaUCCGGacuugcugccUCUCCa -3'
miRNA:   3'- -AGAUUCCGAUC-------AGGCU----------AGGGGc -5'
33376 3' -47.4 NC_007605.1 + 120568 0.7 0.98892
Target:  5'- aCUGAGGCUc--CCGGUCCCa- -3'
miRNA:   3'- aGAUUCCGAucaGGCUAGGGgc -5'
33376 3' -47.4 NC_007605.1 + 105740 0.67 0.998442
Target:  5'- -aUAGGGCUGGaaaUCUGAgCCCCc -3'
miRNA:   3'- agAUUCCGAUC---AGGCUaGGGGc -5'
33376 3' -47.4 NC_007605.1 + 99399 0.66 0.999443
Target:  5'- aCUGGGGCUGGUggccugggaggugCUGAggcccgUCCCCu -3'
miRNA:   3'- aGAUUCCGAUCA-------------GGCU------AGGGGc -5'
33376 3' -47.4 NC_007605.1 + 93142 0.69 0.992764
Target:  5'- cCUGGGGCUGGacgacagacUCUGggCCCUGa -3'
miRNA:   3'- aGAUUCCGAUC---------AGGCuaGGGGC- -5'
33376 3' -47.4 NC_007605.1 + 91941 0.66 0.999658
Target:  5'- --aGAGGCcAGggCCGAggCCCCGc -3'
miRNA:   3'- agaUUCCGaUCa-GGCUa-GGGGC- -5'
33376 3' -47.4 NC_007605.1 + 85176 0.67 0.998442
Target:  5'- cCUGAGGUgccacCCGuUCCCCGg -3'
miRNA:   3'- aGAUUCCGauca-GGCuAGGGGC- -5'
33376 3' -47.4 NC_007605.1 + 72644 0.68 0.997275
Target:  5'- aCUGcacguGGGCUGG-CCGGcCCCCa -3'
miRNA:   3'- aGAU-----UCCGAUCaGGCUaGGGGc -5'
33376 3' -47.4 NC_007605.1 + 68701 0.67 0.998721
Target:  5'- gUCUGGGGCguuguuggAGUCCuGUgCCCa -3'
miRNA:   3'- -AGAUUCCGa-------UCAGGcUAgGGGc -5'
33376 3' -47.4 NC_007605.1 + 61340 0.66 0.999658
Target:  5'- --cGAGGCauacugCCGGUCCCUGa -3'
miRNA:   3'- agaUUCCGauca--GGCUAGGGGC- -5'
33376 3' -47.4 NC_007605.1 + 60845 0.7 0.983032
Target:  5'- --gGGGGCgcAGUCCGAccgccuggggggacUCCCCGg -3'
miRNA:   3'- agaUUCCGa-UCAGGCU--------------AGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.