miRNA display CGI


Results 1 - 20 of 190 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33376 5' -42.5 NC_007605.1 + 140089 1.11 0.041736
Target:  5'- aAAGCCUAUGGAUUGGACCAACCu -3'
miRNA:   3'- -UUCGGAUACCUAACCUGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 52390 0.8 0.918937
Target:  5'- gAAGCCgGUGGG-UGGACCGGCg -3'
miRNA:   3'- -UUCGGaUACCUaACCUGGUUGg -5'
33376 5' -42.5 NC_007605.1 + 41825 0.8 0.925172
Target:  5'- gGGGCCUGUGGAcaccugagGGAgCGGCCg -3'
miRNA:   3'- -UUCGGAUACCUaa------CCUgGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 65519 0.79 0.956249
Target:  5'- uGGGCCUcgGGGUgcaGGGCCuGGCCg -3'
miRNA:   3'- -UUCGGAuaCCUAa--CCUGG-UUGG- -5'
33376 5' -42.5 NC_007605.1 + 104963 0.78 0.9604
Target:  5'- gAAGCCUcuccUGGAcccUGGACCAACUa -3'
miRNA:   3'- -UUCGGAu---ACCUa--ACCUGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 64697 0.75 0.993926
Target:  5'- cGAGCCgggGUGGGUguaggggugacggGGGCUGGCCa -3'
miRNA:   3'- -UUCGGa--UACCUAa------------CCUGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 38428 0.75 0.994305
Target:  5'- cGGCCgccgGUGGGUccgcUGGGCCGcuGCCc -3'
miRNA:   3'- uUCGGa---UACCUA----ACCUGGU--UGG- -5'
33376 5' -42.5 NC_007605.1 + 143699 0.75 0.994305
Target:  5'- --cCCUAUGGAggGGACCcuCCu -3'
miRNA:   3'- uucGGAUACCUaaCCUGGuuGG- -5'
33376 5' -42.5 NC_007605.1 + 40883 0.75 0.994305
Target:  5'- --cCCUAUGGAggGGACCcuCCu -3'
miRNA:   3'- uucGGAUACCUaaCCUGGuuGG- -5'
33376 5' -42.5 NC_007605.1 + 39677 0.75 0.994305
Target:  5'- cGGCCgccgGUGGGUccgcUGGGCCGcuGCCc -3'
miRNA:   3'- uUCGGa---UACCUA----ACCUGGU--UGG- -5'
33376 5' -42.5 NC_007605.1 + 39552 0.75 0.994305
Target:  5'- cGGCCgccgGUGGGUccgcUGGGCCGcuGCCc -3'
miRNA:   3'- uUCGGa---UACCUA----ACCUGGU--UGG- -5'
33376 5' -42.5 NC_007605.1 + 39427 0.75 0.994305
Target:  5'- cGGCCgccgGUGGGUccgcUGGGCCGcuGCCc -3'
miRNA:   3'- uUCGGa---UACCUA----ACCUGGU--UGG- -5'
33376 5' -42.5 NC_007605.1 + 39302 0.75 0.994305
Target:  5'- cGGCCgccgGUGGGUccgcUGGGCCGcuGCCc -3'
miRNA:   3'- uUCGGa---UACCUA----ACCUGGU--UGG- -5'
33376 5' -42.5 NC_007605.1 + 39177 0.75 0.994305
Target:  5'- cGGCCgccgGUGGGUccgcUGGGCCGcuGCCc -3'
miRNA:   3'- uUCGGa---UACCUA----ACCUGGU--UGG- -5'
33376 5' -42.5 NC_007605.1 + 38303 0.75 0.994305
Target:  5'- cGGCCgccgGUGGGUccgcUGGGCCGcuGCCc -3'
miRNA:   3'- uUCGGa---UACCUA----ACCUGGU--UGG- -5'
33376 5' -42.5 NC_007605.1 + 38927 0.75 0.994305
Target:  5'- cGGCCgccgGUGGGUccgcUGGGCCGcuGCCc -3'
miRNA:   3'- uUCGGa---UACCUA----ACCUGGU--UGG- -5'
33376 5' -42.5 NC_007605.1 + 38803 0.75 0.994305
Target:  5'- cGGCCgccgGUGGGUccgcUGGGCCGcuGCCc -3'
miRNA:   3'- uUCGGa---UACCUA----ACCUGGU--UGG- -5'
33376 5' -42.5 NC_007605.1 + 38678 0.75 0.994305
Target:  5'- cGGCCgccgGUGGGUccgcUGGGCCGcuGCCc -3'
miRNA:   3'- uUCGGa---UACCUA----ACCUGGU--UGG- -5'
33376 5' -42.5 NC_007605.1 + 38553 0.75 0.994305
Target:  5'- cGGCCgccgGUGGGUccgcUGGGCCGcuGCCc -3'
miRNA:   3'- uUCGGa---UACCUA----ACCUGGU--UGG- -5'
33376 5' -42.5 NC_007605.1 + 39052 0.75 0.994305
Target:  5'- cGGCCgccgGUGGGUccgcUGGGCCGcuGCCc -3'
miRNA:   3'- uUCGGa---UACCUA----ACCUGGU--UGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.