miRNA display CGI


Results 1 - 20 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33376 5' -42.5 NC_007605.1 + 17605 0.73 0.998944
Target:  5'- cAAGCCUAggGGAgaccgaagUgaaggcccUGGACCAACCc -3'
miRNA:   3'- -UUCGGAUa-CCU--------A--------ACCUGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 39302 0.75 0.994305
Target:  5'- cGGCCgccgGUGGGUccgcUGGGCCGcuGCCc -3'
miRNA:   3'- uUCGGa---UACCUA----ACCUGGU--UGG- -5'
33376 5' -42.5 NC_007605.1 + 39427 0.75 0.994305
Target:  5'- cGGCCgccgGUGGGUccgcUGGGCCGcuGCCc -3'
miRNA:   3'- uUCGGa---UACCUA----ACCUGGU--UGG- -5'
33376 5' -42.5 NC_007605.1 + 39552 0.75 0.994305
Target:  5'- cGGCCgccgGUGGGUccgcUGGGCCGcuGCCc -3'
miRNA:   3'- uUCGGa---UACCUA----ACCUGGU--UGG- -5'
33376 5' -42.5 NC_007605.1 + 39677 0.75 0.994305
Target:  5'- cGGCCgccgGUGGGUccgcUGGGCCGcuGCCc -3'
miRNA:   3'- uUCGGa---UACCUA----ACCUGGU--UGG- -5'
33376 5' -42.5 NC_007605.1 + 40234 0.75 0.995169
Target:  5'- cAGGCCUAgGGGUccagGGGgCAGCCg -3'
miRNA:   3'- -UUCGGAUaCCUAa---CCUgGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 744 0.74 0.997631
Target:  5'- gGGGCCUA-GGuacucUUGGugCAGCCc -3'
miRNA:   3'- -UUCGGAUaCCu----AACCugGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 126442 0.73 0.998695
Target:  5'- cAGUCUAUucuuuacggacgGGGUggGGGCCAACCu -3'
miRNA:   3'- uUCGGAUA------------CCUAa-CCUGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 14536 0.73 0.998944
Target:  5'- cAAGCCUAggGGAgaccgaagUgaaggcccUGGACCAACCc -3'
miRNA:   3'- -UUCGGAUa-CCU--------A--------ACCUGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 39177 0.75 0.994305
Target:  5'- cGGCCgccgGUGGGUccgcUGGGCCGcuGCCc -3'
miRNA:   3'- uUCGGa---UACCUA----ACCUGGU--UGG- -5'
33376 5' -42.5 NC_007605.1 + 39052 0.75 0.994305
Target:  5'- cGGCCgccgGUGGGUccgcUGGGCCGcuGCCc -3'
miRNA:   3'- uUCGGa---UACCUA----ACCUGGU--UGG- -5'
33376 5' -42.5 NC_007605.1 + 38927 0.75 0.994305
Target:  5'- cGGCCgccgGUGGGUccgcUGGGCCGcuGCCc -3'
miRNA:   3'- uUCGGa---UACCUA----ACCUGGU--UGG- -5'
33376 5' -42.5 NC_007605.1 + 41825 0.8 0.925172
Target:  5'- gGGGCCUGUGGAcaccugagGGAgCGGCCg -3'
miRNA:   3'- -UUCGGAUACCUaa------CCUgGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 65519 0.79 0.956249
Target:  5'- uGGGCCUcgGGGUgcaGGGCCuGGCCg -3'
miRNA:   3'- -UUCGGAuaCCUAa--CCUGG-UUGG- -5'
33376 5' -42.5 NC_007605.1 + 64697 0.75 0.993926
Target:  5'- cGAGCCgggGUGGGUguaggggugacggGGGCUGGCCa -3'
miRNA:   3'- -UUCGGa--UACCUAa------------CCUGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 38303 0.75 0.994305
Target:  5'- cGGCCgccgGUGGGUccgcUGGGCCGcuGCCc -3'
miRNA:   3'- uUCGGa---UACCUA----ACCUGGU--UGG- -5'
33376 5' -42.5 NC_007605.1 + 38428 0.75 0.994305
Target:  5'- cGGCCgccgGUGGGUccgcUGGGCCGcuGCCc -3'
miRNA:   3'- uUCGGa---UACCUA----ACCUGGU--UGG- -5'
33376 5' -42.5 NC_007605.1 + 38553 0.75 0.994305
Target:  5'- cGGCCgccgGUGGGUccgcUGGGCCGcuGCCc -3'
miRNA:   3'- uUCGGa---UACCUA----ACCUGGU--UGG- -5'
33376 5' -42.5 NC_007605.1 + 38678 0.75 0.994305
Target:  5'- cGGCCgccgGUGGGUccgcUGGGCCGcuGCCc -3'
miRNA:   3'- uUCGGa---UACCUA----ACCUGGU--UGG- -5'
33376 5' -42.5 NC_007605.1 + 38803 0.75 0.994305
Target:  5'- cGGCCgccgGUGGGUccgcUGGGCCGcuGCCc -3'
miRNA:   3'- uUCGGa---UACCUA----ACCUGGU--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.