miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33397 3' -53.6 NC_007605.1 + 74261 0.66 0.978528
Target:  5'- uGUCUGCG-CCGCAUCUAccGCGUUa -3'
miRNA:   3'- cUAGGUGCuGGCGUAGGUcaUGCAGa -5'
33397 3' -53.6 NC_007605.1 + 62538 0.66 0.97074
Target:  5'- cGUCCAgGGCCGCcUCCAG-AUGg-- -3'
miRNA:   3'- cUAGGUgCUGGCGuAGGUCaUGCaga -5'
33397 3' -53.6 NC_007605.1 + 53198 0.67 0.95746
Target:  5'- -cUCCAUuGCCcCAUCCAGUugGUg- -3'
miRNA:   3'- cuAGGUGcUGGcGUAGGUCAugCAga -5'
33397 3' -53.6 NC_007605.1 + 95830 0.67 0.95746
Target:  5'- aGGUCCACuGCCGCcggagccuucugGUCCAGaUGUGUCUc -3'
miRNA:   3'- -CUAGGUGcUGGCG------------UAGGUC-AUGCAGA- -5'
33397 3' -53.6 NC_007605.1 + 139241 0.67 0.949477
Target:  5'- aGGUCCAUagcACCGCuAUCCAcUAUGUCUc -3'
miRNA:   3'- -CUAGGUGc--UGGCG-UAGGUcAUGCAGA- -5'
33397 3' -53.6 NC_007605.1 + 49146 0.67 0.949477
Target:  5'- --aCCAcCGGCCGCAUgCAaGUGCgGUCg -3'
miRNA:   3'- cuaGGU-GCUGGCGUAgGU-CAUG-CAGa -5'
33397 3' -53.6 NC_007605.1 + 162938 0.67 0.943787
Target:  5'- -cUCCACagcguaguuucccgGACCGUugguUCCGGUcACGUCUg -3'
miRNA:   3'- cuAGGUG--------------CUGGCGu---AGGUCA-UGCAGA- -5'
33397 3' -53.6 NC_007605.1 + 161524 0.69 0.895252
Target:  5'- -cUCCAcCGcCCGCGUgcCCAGUACGUg- -3'
miRNA:   3'- cuAGGU-GCuGGCGUA--GGUCAUGCAga -5'
33397 3' -53.6 NC_007605.1 + 162437 0.71 0.826847
Target:  5'- cGUCCACcGCCGCAUCC---ACGUCc -3'
miRNA:   3'- cUAGGUGcUGGCGUAGGucaUGCAGa -5'
33397 3' -53.6 NC_007605.1 + 49522 0.71 0.809493
Target:  5'- cGUCCACGGCCGUAgcCCAGUccGCGa-- -3'
miRNA:   3'- cUAGGUGCUGGCGUa-GGUCA--UGCaga -5'
33397 3' -53.6 NC_007605.1 + 59191 0.76 0.550931
Target:  5'- --gCCGCuuuGCCgGCAUCCAGUGCGUCa -3'
miRNA:   3'- cuaGGUGc--UGG-CGUAGGUCAUGCAGa -5'
33397 3' -53.6 NC_007605.1 + 153500 1.07 0.007223
Target:  5'- aGAUCCACGACCGCAUCCAGUACGUCUu -3'
miRNA:   3'- -CUAGGUGCUGGCGUAGGUCAUGCAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.