Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33415 | 3' | -56 | NC_007605.1 | + | 103023 | 0.66 | 0.930373 |
Target: 5'- aGUCUCAGCUGCaGGcCUCccugGGUCCCg- -3' miRNA: 3'- -CGGAGUUGAUG-CU-GAGca--CCGGGGac -5' |
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33415 | 3' | -56 | NC_007605.1 | + | 62173 | 0.66 | 0.935364 |
Target: 5'- gGCCUUGAUguccGCGGC-CGUGGgcugaCCCUGc -3' miRNA: 3'- -CGGAGUUGa---UGCUGaGCACCg----GGGAC- -5' |
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33415 | 3' | -56 | NC_007605.1 | + | 169297 | 0.66 | 0.919691 |
Target: 5'- gGCCUCGugUcaGCGGuCUC-UGGCCCg-- -3' miRNA: 3'- -CGGAGUugA--UGCU-GAGcACCGGGgac -5' |
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33415 | 3' | -56 | NC_007605.1 | + | 126432 | 0.66 | 0.913999 |
Target: 5'- gGCCaUCAccagaccggagGCUgGCGACcauUCGcagGGCCCCUGc -3' miRNA: 3'- -CGG-AGU-----------UGA-UGCUG---AGCa--CCGGGGAC- -5' |
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33415 | 3' | -56 | NC_007605.1 | + | 77592 | 0.66 | 0.930373 |
Target: 5'- gGCCUgAcGCUugG-CUgGUGGUgCCUGg -3' miRNA: 3'- -CGGAgU-UGAugCuGAgCACCGgGGAC- -5' |
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33415 | 3' | -56 | NC_007605.1 | + | 35447 | 0.67 | 0.88893 |
Target: 5'- gGCCUUuaaaUACGACUCGgcugGGauauuggccacaCCCCUGu -3' miRNA: 3'- -CGGAGuug-AUGCUGAGCa---CC------------GGGGAC- -5' |
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33415 | 3' | -56 | NC_007605.1 | + | 137821 | 0.67 | 0.882101 |
Target: 5'- aCCUCGGgUGCccgcuGGCUCcaaccucgGGCCCCUGg -3' miRNA: 3'- cGGAGUUgAUG-----CUGAGca------CCGGGGAC- -5' |
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33415 | 3' | -56 | NC_007605.1 | + | 156235 | 0.67 | 0.882101 |
Target: 5'- aCCUCGGgUGCccgcuGGCUCcaaccucgGGCCCCUGg -3' miRNA: 3'- cGGAGUUgAUG-----CUGAGca------CCGGGGAC- -5' |
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33415 | 3' | -56 | NC_007605.1 | + | 147028 | 0.67 | 0.882101 |
Target: 5'- aCCUCGGgUGCccgcuGGCUCcaaccucgGGCCCCUGg -3' miRNA: 3'- cGGAGUUgAUG-----CUGAGca------CCGGGGAC- -5' |
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33415 | 3' | -56 | NC_007605.1 | + | 140890 | 0.67 | 0.882101 |
Target: 5'- aCCUCGGgUGCccgcuGGCUCcaaccucgGGCCCCUGg -3' miRNA: 3'- cGGAGUUgAUG-----CUGAGca------CCGGGGAC- -5' |
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33415 | 3' | -56 | NC_007605.1 | + | 153166 | 0.67 | 0.882101 |
Target: 5'- aCCUCGGgUGCccgcuGGCUCcaaccucgGGCCCCUGg -3' miRNA: 3'- cGGAGUUgAUG-----CUGAGca------CCGGGGAC- -5' |
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33415 | 3' | -56 | NC_007605.1 | + | 69089 | 0.67 | 0.882101 |
Target: 5'- uGCCUCucUUAUGcCU-GUGGCCCCg- -3' miRNA: 3'- -CGGAGuuGAUGCuGAgCACCGGGGac -5' |
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33415 | 3' | -56 | NC_007605.1 | + | 150097 | 0.67 | 0.882101 |
Target: 5'- aCCUCGGgUGCccgcuGGCUCcaaccucgGGCCCCUGg -3' miRNA: 3'- cGGAGUUgAUG-----CUGAGca------CCGGGGAC- -5' |
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33415 | 3' | -56 | NC_007605.1 | + | 143959 | 0.67 | 0.882101 |
Target: 5'- aCCUCGGgUGCccgcuGGCUCcaaccucgGGCCCCUGg -3' miRNA: 3'- cGGAGUUgAUG-----CUGAGca------CCGGGGAC- -5' |
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33415 | 3' | -56 | NC_007605.1 | + | 159304 | 0.67 | 0.882101 |
Target: 5'- aCCUCGGgUGCccgcuGGCUCcaaccucgGGCCCCUGg -3' miRNA: 3'- cGGAGUUgAUG-----CUGAGca------CCGGGGAC- -5' |
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33415 | 3' | -56 | NC_007605.1 | + | 20881 | 0.68 | 0.859571 |
Target: 5'- gGCCUCGGCUGgGACacgggaCGUGGUCggcuggcaccaggCCUGg -3' miRNA: 3'- -CGGAGUUGAUgCUGa-----GCACCGG-------------GGAC- -5' |
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33415 | 3' | -56 | NC_007605.1 | + | 47672 | 0.68 | 0.860329 |
Target: 5'- gGCCccCAGCUucugagGCGGCU-GUGGCCUCUa -3' miRNA: 3'- -CGGa-GUUGA------UGCUGAgCACCGGGGAc -5' |
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33415 | 3' | -56 | NC_007605.1 | + | 56970 | 0.68 | 0.850322 |
Target: 5'- gGCCUCGGCcugggguaaggugauCGACUCcaGGCCCCc- -3' miRNA: 3'- -CGGAGUUGau-------------GCUGAGcaCCGGGGac -5' |
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33415 | 3' | -56 | NC_007605.1 | + | 53476 | 0.69 | 0.793898 |
Target: 5'- cCCUgCAGCUGgGACUCuuccugGGCCuCCUGg -3' miRNA: 3'- cGGA-GUUGAUgCUGAGca----CCGG-GGAC- -5' |
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33415 | 3' | -56 | NC_007605.1 | + | 1875 | 0.7 | 0.766411 |
Target: 5'- cGCgCUCGGCcuaGACcCGgGGCCCCUGa -3' miRNA: 3'- -CG-GAGUUGaugCUGaGCaCCGGGGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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