miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33415 3' -56 NC_007605.1 + 8395 1.1 0.002965
Target:  5'- aGCCUCAACUACGACUCGUGGCCCCUGu -3'
miRNA:   3'- -CGGAGUUGAUGCUGAGCACCGGGGAC- -5'
33415 3' -56 NC_007605.1 + 53403 0.72 0.616964
Target:  5'- aGCCUCcaccacgaucuugAGCUggcGCGGgUCGgugUGGCCCCUGg -3'
miRNA:   3'- -CGGAG-------------UUGA---UGCUgAGC---ACCGGGGAC- -5'
33415 3' -56 NC_007605.1 + 120963 0.72 0.616964
Target:  5'- cGCCUCcccacggccgucgGGCUGCGACccCGUGcGCCCgUGg -3'
miRNA:   3'- -CGGAG-------------UUGAUGCUGa-GCAC-CGGGgAC- -5'
33415 3' -56 NC_007605.1 + 4113 0.72 0.648347
Target:  5'- cGCCUcCAACUucAUGACcgUgGUGGCCUCUGu -3'
miRNA:   3'- -CGGA-GUUGA--UGCUG--AgCACCGGGGAC- -5'
33415 3' -56 NC_007605.1 + 116352 0.71 0.668545
Target:  5'- gGCCUCAGCgcCGGCUgGaaaugcGGCCCCa- -3'
miRNA:   3'- -CGGAGUUGauGCUGAgCa-----CCGGGGac -5'
33415 3' -56 NC_007605.1 + 144318 0.71 0.678604
Target:  5'- aGCCUCuAACUuuGGCU-GUGGCCUCUa -3'
miRNA:   3'- -CGGAG-UUGAugCUGAgCACCGGGGAc -5'
33415 3' -56 NC_007605.1 + 48014 0.71 0.688627
Target:  5'- aGCCUCAAC-GCGGC-CccGGCCCCg- -3'
miRNA:   3'- -CGGAGUUGaUGCUGaGcaCCGGGGac -5'
33415 3' -56 NC_007605.1 + 148370 0.71 0.708525
Target:  5'- aCCUCGAUaacCGGCUCGUGGCUCgUa -3'
miRNA:   3'- cGGAGUUGau-GCUGAGCACCGGGgAc -5'
33415 3' -56 NC_007605.1 + 105419 0.71 0.718383
Target:  5'- aGCCUCAAggAUGGCU-GUGGCCuCCg- -3'
miRNA:   3'- -CGGAGUUgaUGCUGAgCACCGG-GGac -5'
33415 3' -56 NC_007605.1 + 1875 0.7 0.766411
Target:  5'- cGCgCUCGGCcuaGACcCGgGGCCCCUGa -3'
miRNA:   3'- -CG-GAGUUGaugCUGaGCaCCGGGGAC- -5'
33415 3' -56 NC_007605.1 + 53476 0.69 0.793898
Target:  5'- cCCUgCAGCUGgGACUCuuccugGGCCuCCUGg -3'
miRNA:   3'- cGGA-GUUGAUgCUGAGca----CCGG-GGAC- -5'
33415 3' -56 NC_007605.1 + 56970 0.68 0.850322
Target:  5'- gGCCUCGGCcugggguaaggugauCGACUCcaGGCCCCc- -3'
miRNA:   3'- -CGGAGUUGau-------------GCUGAGcaCCGGGGac -5'
33415 3' -56 NC_007605.1 + 20881 0.68 0.859571
Target:  5'- gGCCUCGGCUGgGACacgggaCGUGGUCggcuggcaccaggCCUGg -3'
miRNA:   3'- -CGGAGUUGAUgCUGa-----GCACCGG-------------GGAC- -5'
33415 3' -56 NC_007605.1 + 47672 0.68 0.860329
Target:  5'- gGCCccCAGCUucugagGCGGCU-GUGGCCUCUa -3'
miRNA:   3'- -CGGa-GUUGA------UGCUGAgCACCGGGGAc -5'
33415 3' -56 NC_007605.1 + 140890 0.67 0.882101
Target:  5'- aCCUCGGgUGCccgcuGGCUCcaaccucgGGCCCCUGg -3'
miRNA:   3'- cGGAGUUgAUG-----CUGAGca------CCGGGGAC- -5'
33415 3' -56 NC_007605.1 + 137821 0.67 0.882101
Target:  5'- aCCUCGGgUGCccgcuGGCUCcaaccucgGGCCCCUGg -3'
miRNA:   3'- cGGAGUUgAUG-----CUGAGca------CCGGGGAC- -5'
33415 3' -56 NC_007605.1 + 147028 0.67 0.882101
Target:  5'- aCCUCGGgUGCccgcuGGCUCcaaccucgGGCCCCUGg -3'
miRNA:   3'- cGGAGUUgAUG-----CUGAGca------CCGGGGAC- -5'
33415 3' -56 NC_007605.1 + 150097 0.67 0.882101
Target:  5'- aCCUCGGgUGCccgcuGGCUCcaaccucgGGCCCCUGg -3'
miRNA:   3'- cGGAGUUgAUG-----CUGAGca------CCGGGGAC- -5'
33415 3' -56 NC_007605.1 + 69089 0.67 0.882101
Target:  5'- uGCCUCucUUAUGcCU-GUGGCCCCg- -3'
miRNA:   3'- -CGGAGuuGAUGCuGAgCACCGGGGac -5'
33415 3' -56 NC_007605.1 + 143959 0.67 0.882101
Target:  5'- aCCUCGGgUGCccgcuGGCUCcaaccucgGGCCCCUGg -3'
miRNA:   3'- cGGAGUUgAUG-----CUGAGca------CCGGGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.