miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33415 5' -57.7 NC_007605.1 + 107158 0.66 0.869053
Target:  5'- cUCCGGccuGGCCCGcUGcagGGCUGCc---- -3'
miRNA:   3'- -AGGUCu--CCGGGC-ACa--CCGACGcaaug -5'
33415 5' -57.7 NC_007605.1 + 77500 0.66 0.869053
Target:  5'- aCUGGGGGCCUGg--GGC-GaCGUUGCa -3'
miRNA:   3'- aGGUCUCCGGGCacaCCGaC-GCAAUG- -5'
33415 5' -57.7 NC_007605.1 + 13457 0.66 0.861627
Target:  5'- aCCGGGGGCCUGgccaacgGGgUGCGccGCu -3'
miRNA:   3'- aGGUCUCCGGGCaca----CCgACGCaaUG- -5'
33415 5' -57.7 NC_007605.1 + 171182 0.66 0.861627
Target:  5'- gUCCGcGGGCuCCGgg-GGCUGCGg--- -3'
miRNA:   3'- -AGGUcUCCG-GGCacaCCGACGCaaug -5'
33415 5' -57.7 NC_007605.1 + 170122 0.66 0.861627
Target:  5'- gUCCGcGGGCuCCGgg-GGCUGCGg--- -3'
miRNA:   3'- -AGGUcUCCG-GGCacaCCGACGCaaug -5'
33415 5' -57.7 NC_007605.1 + 169585 0.66 0.861627
Target:  5'- gUCCGcGGGCuCCGgg-GGCUGCGg--- -3'
miRNA:   3'- -AGGUcUCCG-GGCacaCCGACGCaaug -5'
33415 5' -57.7 NC_007605.1 + 48335 0.66 0.853998
Target:  5'- uUCCaAGAGGCCCGgg-GGCaGCaGUUu- -3'
miRNA:   3'- -AGG-UCUCCGGGCacaCCGaCG-CAAug -5'
33415 5' -57.7 NC_007605.1 + 66014 0.66 0.853998
Target:  5'- cCCGGAGGCUC-UGcGGCaGCGcUACc -3'
miRNA:   3'- aGGUCUCCGGGcACaCCGaCGCaAUG- -5'
33415 5' -57.7 NC_007605.1 + 63597 0.66 0.853998
Target:  5'- cUCCGGcGGCgCCGgggGUGGCgGUGgagUAUg -3'
miRNA:   3'- -AGGUCuCCG-GGCa--CACCGaCGCa--AUG- -5'
33415 5' -57.7 NC_007605.1 + 91318 0.66 0.838158
Target:  5'- -gCGGGGGCCgGgucaaGUGGCUGgGgcACc -3'
miRNA:   3'- agGUCUCCGGgCa----CACCGACgCaaUG- -5'
33415 5' -57.7 NC_007605.1 + 87272 0.66 0.837347
Target:  5'- -gCAGAGGCCCGUcauguuuGUGaGCcGUGUgccUGCa -3'
miRNA:   3'- agGUCUCCGGGCA-------CAC-CGaCGCA---AUG- -5'
33415 5' -57.7 NC_007605.1 + 157367 0.67 0.81819
Target:  5'- cCCGGGGGCCguggggggcaccgGUGUGGUgGCGUUccccGCa -3'
miRNA:   3'- aGGUCUCCGGg------------CACACCGaCGCAA----UG- -5'
33415 5' -57.7 NC_007605.1 + 110092 0.68 0.767157
Target:  5'- cCCAcGAGccgcuucGCCCGUGUGGCccggGCGgccUACc -3'
miRNA:   3'- aGGU-CUC-------CGGGCACACCGa---CGCa--AUG- -5'
33415 5' -57.7 NC_007605.1 + 158131 0.68 0.758709
Target:  5'- cCCGGGGGCgucauagagcuCCGUcUGGCUgGCGUaGCg -3'
miRNA:   3'- aGGUCUCCG-----------GGCAcACCGA-CGCAaUG- -5'
33415 5' -57.7 NC_007605.1 + 159276 0.68 0.748264
Target:  5'- cCCAGggacccgagacgaAGGCCCGUcuguagaggaaGUGGUUGCGcaUGCg -3'
miRNA:   3'- aGGUC-------------UCCGGGCA-----------CACCGACGCa-AUG- -5'
33415 5' -57.7 NC_007605.1 + 159137 0.68 0.720181
Target:  5'- gCCAGGGGCCCcgugaugaagGUGUacaGGCUGUGc--- -3'
miRNA:   3'- aGGUCUCCGGG----------CACA---CCGACGCaaug -5'
33415 5' -57.7 NC_007605.1 + 71208 0.69 0.710342
Target:  5'- -gCAGGGGCCUc--UGGCUGCGUUc- -3'
miRNA:   3'- agGUCUCCGGGcacACCGACGCAAug -5'
33415 5' -57.7 NC_007605.1 + 10984 0.69 0.680471
Target:  5'- cCCGGAG-UCUGgacGUGGCUGCGguggUGCg -3'
miRNA:   3'- aGGUCUCcGGGCa--CACCGACGCa---AUG- -5'
33415 5' -57.7 NC_007605.1 + 49400 0.7 0.640137
Target:  5'- -gCAGAGaGCCaGUGUGGCUGgGgcuggUGCu -3'
miRNA:   3'- agGUCUC-CGGgCACACCGACgCa----AUG- -5'
33415 5' -57.7 NC_007605.1 + 40305 0.71 0.5997
Target:  5'- aCCAGGGGCCCGgcggGGgUGgGgggUGCg -3'
miRNA:   3'- aGGUCUCCGGGCaca-CCgACgCa--AUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.