Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33417 | 5' | -61.5 | NC_007605.1 | + | 158147 | 0.66 | 0.693406 |
Target: 5'- ---aGCuCCGucuGGCUGGCGUAgcGGCGCa -3' miRNA: 3'- gacaUGuGGC---CCGACCGCGU--CCGCGa -5' |
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33417 | 5' | -61.5 | NC_007605.1 | + | 159639 | 0.66 | 0.673848 |
Target: 5'- -gGUGCGCCGugaaGGCggcGGCGCAGuccgccuucaGCGCc -3' miRNA: 3'- gaCAUGUGGC----CCGa--CCGCGUC----------CGCGa -5' |
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33417 | 5' | -61.5 | NC_007605.1 | + | 91844 | 0.66 | 0.683647 |
Target: 5'- uUGgGCACCGGGCUucaGGgGCAuGGUcggGCUc -3' miRNA: 3'- gACaUGUGGCCCGA---CCgCGU-CCG---CGA- -5' |
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33417 | 5' | -61.5 | NC_007605.1 | + | 63372 | 0.66 | 0.673848 |
Target: 5'- gCUGUGgACUGGGgugcgGGUGCGGGUGa- -3' miRNA: 3'- -GACAUgUGGCCCga---CCGCGUCCGCga -5' |
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33417 | 5' | -61.5 | NC_007605.1 | + | 96307 | 0.66 | 0.654163 |
Target: 5'- aUGggugAUAgUGGGCUGaGCG-AGGCGCUc -3' miRNA: 3'- gACa---UGUgGCCCGAC-CGCgUCCGCGA- -5' |
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33417 | 5' | -61.5 | NC_007605.1 | + | 17453 | 0.66 | 0.664017 |
Target: 5'- uCUGUugACCuccuGGCUGGC-CAaGCGCa -3' miRNA: 3'- -GACAugUGGc---CCGACCGcGUcCGCGa -5' |
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33417 | 5' | -61.5 | NC_007605.1 | + | 136548 | 0.67 | 0.62453 |
Target: 5'- --cUACGCCGGGCccgcgGGCGgggaccCGGGUGCc -3' miRNA: 3'- gacAUGUGGCCCGa----CCGC------GUCCGCGa -5' |
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33417 | 5' | -61.5 | NC_007605.1 | + | 39635 | 0.67 | 0.634412 |
Target: 5'- cCUGggGCAgCCGGGguucCUGGCGCuccGGGgGCa -3' miRNA: 3'- -GACa-UGU-GGCCC----GACCGCG---UCCgCGa -5' |
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33417 | 5' | -61.5 | NC_007605.1 | + | 39510 | 0.67 | 0.634412 |
Target: 5'- cCUGggGCAgCCGGGguucCUGGCGCuccGGGgGCa -3' miRNA: 3'- -GACa-UGU-GGCCC----GACCGCG---UCCgCGa -5' |
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33417 | 5' | -61.5 | NC_007605.1 | + | 39385 | 0.67 | 0.634412 |
Target: 5'- cCUGggGCAgCCGGGguucCUGGCGCuccGGGgGCa -3' miRNA: 3'- -GACa-UGU-GGCCC----GACCGCG---UCCgCGa -5' |
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33417 | 5' | -61.5 | NC_007605.1 | + | 39260 | 0.67 | 0.634412 |
Target: 5'- cCUGggGCAgCCGGGguucCUGGCGCuccGGGgGCa -3' miRNA: 3'- -GACa-UGU-GGCCC----GACCGCG---UCCgCGa -5' |
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33417 | 5' | -61.5 | NC_007605.1 | + | 39135 | 0.67 | 0.634412 |
Target: 5'- cCUGggGCAgCCGGGguucCUGGCGCuccGGGgGCa -3' miRNA: 3'- -GACa-UGU-GGCCC----GACCGCG---UCCgCGa -5' |
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33417 | 5' | -61.5 | NC_007605.1 | + | 39010 | 0.67 | 0.634412 |
Target: 5'- cCUGggGCAgCCGGGguucCUGGCGCuccGGGgGCa -3' miRNA: 3'- -GACa-UGU-GGCCC----GACCGCG---UCCgCGa -5' |
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33417 | 5' | -61.5 | NC_007605.1 | + | 38886 | 0.67 | 0.634412 |
Target: 5'- cCUGggGCAgCCGGGguucCUGGCGCuccGGGgGCa -3' miRNA: 3'- -GACa-UGU-GGCCC----GACCGCG---UCCgCGa -5' |
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33417 | 5' | -61.5 | NC_007605.1 | + | 38761 | 0.67 | 0.634412 |
Target: 5'- cCUGggGCAgCCGGGguucCUGGCGCuccGGGgGCa -3' miRNA: 3'- -GACa-UGU-GGCCC----GACCGCG---UCCgCGa -5' |
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33417 | 5' | -61.5 | NC_007605.1 | + | 91337 | 0.67 | 0.585125 |
Target: 5'- gCUGggGCACCgGGGCUGGCGuUAGGg--- -3' miRNA: 3'- -GACa-UGUGG-CCCGACCGC-GUCCgcga -5' |
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33417 | 5' | -61.5 | NC_007605.1 | + | 38511 | 0.67 | 0.634412 |
Target: 5'- cCUGggGCAgCCGGGguucCUGGCGCuccGGGgGCa -3' miRNA: 3'- -GACa-UGU-GGCCC----GACCGCG---UCCgCGa -5' |
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33417 | 5' | -61.5 | NC_007605.1 | + | 38386 | 0.67 | 0.634412 |
Target: 5'- cCUGggGCAgCCGGGguucCUGGCGCuccGGGgGCa -3' miRNA: 3'- -GACa-UGU-GGCCC----GACCGCG---UCCgCGa -5' |
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33417 | 5' | -61.5 | NC_007605.1 | + | 77611 | 0.67 | 0.634412 |
Target: 5'- -gGUGC-CUGGGCggGGUGCuGGCGa- -3' miRNA: 3'- gaCAUGuGGCCCGa-CCGCGuCCGCga -5' |
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33417 | 5' | -61.5 | NC_007605.1 | + | 166790 | 0.67 | 0.62453 |
Target: 5'- -cGUAgaagaGCCGGGCaGGcCGCAGGCa-- -3' miRNA: 3'- gaCAUg----UGGCCCGaCC-GCGUCCGcga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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