miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33417 5' -61.5 NC_007605.1 + 224 0.67 0.62453
Target:  5'- uUGgGgGCUuGGCUGGCGCggccggGGGCGCg -3'
miRNA:   3'- gACaUgUGGcCCGACCGCG------UCCGCGa -5'
33417 5' -61.5 NC_007605.1 + 762 0.67 0.62453
Target:  5'- uUGgGgGCUuGGCUGGCGCggccggGGGCGCg -3'
miRNA:   3'- gACaUgUGGcCCGACCGCG------UCCGCGa -5'
33417 5' -61.5 NC_007605.1 + 1284 0.67 0.62453
Target:  5'- uUGgGgGCUuGGCUGGCGCggccggGGGCGCg -3'
miRNA:   3'- gACaUgUGGcCCGACCGCG------UCCGCGa -5'
33417 5' -61.5 NC_007605.1 + 1822 0.67 0.62453
Target:  5'- uUGgGgGCUuGGCUGGCGCggccggGGGCGCg -3'
miRNA:   3'- gACaUgUGGcCCGACCGCG------UCCGCGa -5'
33417 5' -61.5 NC_007605.1 + 7084 0.68 0.555881
Target:  5'- gCUGUACG-CGGaGCUGGCcuGCAGGacaGCc -3'
miRNA:   3'- -GACAUGUgGCC-CGACCG--CGUCCg--CGa -5'
33417 5' -61.5 NC_007605.1 + 8151 1.07 0.001219
Target:  5'- gCUGUACACCGGGCUGGCGCAGGCGCUg -3'
miRNA:   3'- -GACAUGUGGCCCGACCGCGUCCGCGA- -5'
33417 5' -61.5 NC_007605.1 + 12487 0.69 0.508184
Target:  5'- cCUGUACACCuucaucacgGGGCcccUGGCGgAGGagaGCg -3'
miRNA:   3'- -GACAUGUGG---------CCCG---ACCGCgUCCg--CGa -5'
33417 5' -61.5 NC_007605.1 + 17453 0.66 0.664017
Target:  5'- uCUGUugACCuccuGGCUGGC-CAaGCGCa -3'
miRNA:   3'- -GACAugUGGc---CCGACCGcGUcCGCGa -5'
33417 5' -61.5 NC_007605.1 + 38261 0.67 0.634412
Target:  5'- cCUGggGCAgCCGGGguucCUGGCGCuccGGGgGCa -3'
miRNA:   3'- -GACa-UGU-GGCCC----GACCGCG---UCCgCGa -5'
33417 5' -61.5 NC_007605.1 + 38308 0.75 0.236476
Target:  5'- ---aGgGCgGGGCUGGCGCAGaGCGCc -3'
miRNA:   3'- gacaUgUGgCCCGACCGCGUC-CGCGa -5'
33417 5' -61.5 NC_007605.1 + 38386 0.67 0.634412
Target:  5'- cCUGggGCAgCCGGGguucCUGGCGCuccGGGgGCa -3'
miRNA:   3'- -GACa-UGU-GGCCC----GACCGCG---UCCgCGa -5'
33417 5' -61.5 NC_007605.1 + 38511 0.67 0.634412
Target:  5'- cCUGggGCAgCCGGGguucCUGGCGCuccGGGgGCa -3'
miRNA:   3'- -GACa-UGU-GGCCC----GACCGCG---UCCgCGa -5'
33417 5' -61.5 NC_007605.1 + 38636 0.67 0.634412
Target:  5'- cCUGggGCAgCCGGGguucCUGGCGCuccGGGgGCa -3'
miRNA:   3'- -GACa-UGU-GGCCC----GACCGCG---UCCgCGa -5'
33417 5' -61.5 NC_007605.1 + 38761 0.67 0.634412
Target:  5'- cCUGggGCAgCCGGGguucCUGGCGCuccGGGgGCa -3'
miRNA:   3'- -GACa-UGU-GGCCC----GACCGCG---UCCgCGa -5'
33417 5' -61.5 NC_007605.1 + 38886 0.67 0.634412
Target:  5'- cCUGggGCAgCCGGGguucCUGGCGCuccGGGgGCa -3'
miRNA:   3'- -GACa-UGU-GGCCC----GACCGCG---UCCgCGa -5'
33417 5' -61.5 NC_007605.1 + 39010 0.67 0.634412
Target:  5'- cCUGggGCAgCCGGGguucCUGGCGCuccGGGgGCa -3'
miRNA:   3'- -GACa-UGU-GGCCC----GACCGCG---UCCgCGa -5'
33417 5' -61.5 NC_007605.1 + 39135 0.67 0.634412
Target:  5'- cCUGggGCAgCCGGGguucCUGGCGCuccGGGgGCa -3'
miRNA:   3'- -GACa-UGU-GGCCC----GACCGCG---UCCgCGa -5'
33417 5' -61.5 NC_007605.1 + 39260 0.67 0.634412
Target:  5'- cCUGggGCAgCCGGGguucCUGGCGCuccGGGgGCa -3'
miRNA:   3'- -GACa-UGU-GGCCC----GACCGCG---UCCgCGa -5'
33417 5' -61.5 NC_007605.1 + 39385 0.67 0.634412
Target:  5'- cCUGggGCAgCCGGGguucCUGGCGCuccGGGgGCa -3'
miRNA:   3'- -GACa-UGU-GGCCC----GACCGCG---UCCgCGa -5'
33417 5' -61.5 NC_007605.1 + 39510 0.67 0.634412
Target:  5'- cCUGggGCAgCCGGGguucCUGGCGCuccGGGgGCa -3'
miRNA:   3'- -GACa-UGU-GGCCC----GACCGCG---UCCgCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.