miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33615 5' -56.8 NC_007605.1 + 160688 1.08 0.002751
Target:  5'- gCUCAGCUCAACCGCCAGGGCGUACACc -3'
miRNA:   3'- -GAGUCGAGUUGGCGGUCCCGCAUGUG- -5'
33615 5' -56.8 NC_007605.1 + 25212 0.74 0.465341
Target:  5'- gUCAGC--AGCaUGCCAGGGCGUgGCACa -3'
miRNA:   3'- gAGUCGagUUG-GCGGUCCCGCA-UGUG- -5'
33615 5' -56.8 NC_007605.1 + 121099 0.73 0.503139
Target:  5'- -cCGGCUUGGCCGCCccGGCGcACACc -3'
miRNA:   3'- gaGUCGAGUUGGCGGucCCGCaUGUG- -5'
33615 5' -56.8 NC_007605.1 + 151745 0.71 0.612653
Target:  5'- --gGGCUgGGCCGCCAGGGgG-GCAa -3'
miRNA:   3'- gagUCGAgUUGGCGGUCCCgCaUGUg -5'
33615 5' -56.8 NC_007605.1 + 148677 0.71 0.612653
Target:  5'- --gGGCUgGGCCGCCAGGGgG-GCAa -3'
miRNA:   3'- gagUCGAgUUGGCGGUCCCgCaUGUg -5'
33615 5' -56.8 NC_007605.1 + 145608 0.71 0.612653
Target:  5'- --gGGCUgGGCCGCCAGGGgG-GCAa -3'
miRNA:   3'- gagUCGAgUUGGCGGUCCCgCaUGUg -5'
33615 5' -56.8 NC_007605.1 + 157883 0.71 0.612653
Target:  5'- --gGGCUgGGCCGCCAGGGgG-GCAa -3'
miRNA:   3'- gagUCGAgUUGGCGGUCCCgCaUGUg -5'
33615 5' -56.8 NC_007605.1 + 154814 0.71 0.612653
Target:  5'- --gGGCUgGGCCGCCAGGGgG-GCAa -3'
miRNA:   3'- gagUCGAgUUGGCGGUCCCgCaUGUg -5'
33615 5' -56.8 NC_007605.1 + 142539 0.71 0.612653
Target:  5'- --gGGCUgGGCCGCCAGGGgG-GCAa -3'
miRNA:   3'- gagUCGAgUUGGCGGUCCCgCaUGUg -5'
33615 5' -56.8 NC_007605.1 + 139470 0.71 0.612653
Target:  5'- --gGGCUgGGCCGCCAGGGgG-GCAa -3'
miRNA:   3'- gagUCGAgUUGGCGGUCCCgCaUGUg -5'
33615 5' -56.8 NC_007605.1 + 136401 0.71 0.612653
Target:  5'- --gGGCUgGGCCGCCAGGGgG-GCAa -3'
miRNA:   3'- gagUCGAgUUGGCGGUCCCgCaUGUg -5'
33615 5' -56.8 NC_007605.1 + 11353 0.69 0.713766
Target:  5'- aUCuGCUgGGCCGCUuucGGGGCGUAa-- -3'
miRNA:   3'- gAGuCGAgUUGGCGG---UCCCGCAUgug -5'
33615 5' -56.8 NC_007605.1 + 8120 0.69 0.733441
Target:  5'- aCUCGGacCUCAGCCGCUgcaugcacgAGGcGCuGUACACc -3'
miRNA:   3'- -GAGUC--GAGUUGGCGG---------UCC-CG-CAUGUG- -5'
33615 5' -56.8 NC_007605.1 + 70869 0.69 0.743153
Target:  5'- -cCAcGCUCAagACUGCCgggcaGGGGCGUGcCGCg -3'
miRNA:   3'- gaGU-CGAGU--UGGCGG-----UCCCGCAU-GUG- -5'
33615 5' -56.8 NC_007605.1 + 118226 0.69 0.749894
Target:  5'- -cCAGCUCAagaucgugguggagGCUGCCAgGGGCcugGCGCu -3'
miRNA:   3'- gaGUCGAGU--------------UGGCGGU-CCCGca-UGUG- -5'
33615 5' -56.8 NC_007605.1 + 59246 0.69 0.752769
Target:  5'- -gCGGCggCAGCCGCCgagagauaaGGGGgGUACGu -3'
miRNA:   3'- gaGUCGa-GUUGGCGG---------UCCCgCAUGUg -5'
33615 5' -56.8 NC_007605.1 + 38536 0.67 0.825158
Target:  5'- -cCAGCUCGAgCGCUucGGGgG-ACACg -3'
miRNA:   3'- gaGUCGAGUUgGCGGu-CCCgCaUGUG- -5'
33615 5' -56.8 NC_007605.1 + 12974 0.67 0.833511
Target:  5'- gUCGuGCUgcUAGCCGCCcuGGCGUGC-Cg -3'
miRNA:   3'- gAGU-CGA--GUUGGCGGucCCGCAUGuG- -5'
33615 5' -56.8 NC_007605.1 + 40011 0.67 0.841682
Target:  5'- -cCGGUUCccuCCcCCAGGGCGUGCc- -3'
miRNA:   3'- gaGUCGAGuu-GGcGGUCCCGCAUGug -5'
33615 5' -56.8 NC_007605.1 + 114193 0.67 0.855137
Target:  5'- cCUCAGCagcagcccccgccaUCAGCCGCCcGGGCu----- -3'
miRNA:   3'- -GAGUCG--------------AGUUGGCGGuCCCGcaugug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.