miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33615 5' -56.8 NC_007605.1 + 8120 0.69 0.733441
Target:  5'- aCUCGGacCUCAGCCGCUgcaugcacgAGGcGCuGUACACc -3'
miRNA:   3'- -GAGUC--GAGUUGGCGG---------UCC-CG-CAUGUG- -5'
33615 5' -56.8 NC_007605.1 + 11353 0.69 0.713766
Target:  5'- aUCuGCUgGGCCGCUuucGGGGCGUAa-- -3'
miRNA:   3'- gAGuCGAgUUGGCGG---UCCCGCAUgug -5'
33615 5' -56.8 NC_007605.1 + 12774 0.66 0.893253
Target:  5'- cCUCggGGC-CAGCCGCCGGGGUu----- -3'
miRNA:   3'- -GAG--UCGaGUUGGCGGUCCCGcaugug -5'
33615 5' -56.8 NC_007605.1 + 12974 0.67 0.833511
Target:  5'- gUCGuGCUgcUAGCCGCCcuGGCGUGC-Cg -3'
miRNA:   3'- gAGU-CGA--GUUGGCGGucCCGCAUGuG- -5'
33615 5' -56.8 NC_007605.1 + 15843 0.66 0.893253
Target:  5'- cCUCggGGC-CAGCCGCCGGGGUu----- -3'
miRNA:   3'- -GAG--UCGaGUUGGCGGUCCCGcaugug -5'
33615 5' -56.8 NC_007605.1 + 18912 0.66 0.893253
Target:  5'- cCUCggGGC-CAGCCGCCGGGGUu----- -3'
miRNA:   3'- -GAG--UCGaGUUGGCGGUCCCGcaugug -5'
33615 5' -56.8 NC_007605.1 + 21980 0.66 0.893253
Target:  5'- cCUCggGGC-CAGCCGCCGGGGUu----- -3'
miRNA:   3'- -GAG--UCGaGUUGGCGGUCCCGcaugug -5'
33615 5' -56.8 NC_007605.1 + 25049 0.66 0.893253
Target:  5'- cCUCggGGC-CAGCCGCCGGGGUu----- -3'
miRNA:   3'- -GAG--UCGaGUUGGCGGUCCCGcaugug -5'
33615 5' -56.8 NC_007605.1 + 25212 0.74 0.465341
Target:  5'- gUCAGC--AGCaUGCCAGGGCGUgGCACa -3'
miRNA:   3'- gAGUCGagUUG-GCGGUCCCGCA-UGUG- -5'
33615 5' -56.8 NC_007605.1 + 28118 0.66 0.893253
Target:  5'- cCUCggGGC-CAGCCGCCGGGGUu----- -3'
miRNA:   3'- -GAG--UCGaGUUGGCGGUCCCGcaugug -5'
33615 5' -56.8 NC_007605.1 + 28378 0.66 0.872417
Target:  5'- -cCAGCgUCGuccagaCGCuCGGGGgGUGCACa -3'
miRNA:   3'- gaGUCG-AGUug----GCG-GUCCCgCAUGUG- -5'
33615 5' -56.8 NC_007605.1 + 31187 0.66 0.893253
Target:  5'- cCUCggGGC-CAGCCGCCGGGGUu----- -3'
miRNA:   3'- -GAG--UCGaGUUGGCGGUCCCGcaugug -5'
33615 5' -56.8 NC_007605.1 + 34256 0.66 0.893253
Target:  5'- cCUCggGGC-CAGCCGCCGGGGUu----- -3'
miRNA:   3'- -GAG--UCGaGUUGGCGGUCCCGcaugug -5'
33615 5' -56.8 NC_007605.1 + 37657 0.66 0.865039
Target:  5'- uUCAGCgCGGCCGUCGuGGGCaGUAguccCGCu -3'
miRNA:   3'- gAGUCGaGUUGGCGGU-CCCG-CAU----GUG- -5'
33615 5' -56.8 NC_007605.1 + 38536 0.67 0.825158
Target:  5'- -cCAGCUCGAgCGCUucGGGgG-ACACg -3'
miRNA:   3'- gaGUCGAGUUgGCGGu-CCCgCaUGUG- -5'
33615 5' -56.8 NC_007605.1 + 38919 0.66 0.893253
Target:  5'- -gCAGCgggCGGCCGCCGGuGG-GUcCGCu -3'
miRNA:   3'- gaGUCGa--GUUGGCGGUC-CCgCAuGUG- -5'
33615 5' -56.8 NC_007605.1 + 39831 0.66 0.879582
Target:  5'- -cCAGCcCcGCCGaucccucccCCAGGGCGUACcCg -3'
miRNA:   3'- gaGUCGaGuUGGC---------GGUCCCGCAUGuG- -5'
33615 5' -56.8 NC_007605.1 + 40011 0.67 0.841682
Target:  5'- -cCGGUUCccuCCcCCAGGGCGUGCc- -3'
miRNA:   3'- gaGUCGAGuu-GGcGGUCCCGCAUGug -5'
33615 5' -56.8 NC_007605.1 + 54274 0.66 0.865039
Target:  5'- aCUC-GCUCAcgaugGCCGUCAGGGCa----- -3'
miRNA:   3'- -GAGuCGAGU-----UGGCGGUCCCGcaugug -5'
33615 5' -56.8 NC_007605.1 + 59246 0.69 0.752769
Target:  5'- -gCGGCggCAGCCGCCgagagauaaGGGGgGUACGu -3'
miRNA:   3'- gaGUCGa-GUUGGCGG---------UCCCgCAUGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.