miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33616 5' -50.6 NC_007605.1 + 38851 0.66 0.995604
Target:  5'- uGGCCcCGCUGGgcaccGcugcgccgccgccagGUCCUGGGg -3'
miRNA:   3'- -CCGGuGCGACUauuu-Caa-------------CAGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 38975 0.66 0.995604
Target:  5'- uGGCCcCGCUGGgcaccGcugcgccgccgccagGUCCUGGGg -3'
miRNA:   3'- -CCGGuGCGACUauuu-Caa-------------CAGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 39100 0.66 0.995604
Target:  5'- uGGCCcCGCUGGgcaccGcugcgccgccgccagGUCCUGGGg -3'
miRNA:   3'- -CCGGuGCGACUauuu-Caa-------------CAGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 39225 0.66 0.995604
Target:  5'- uGGCCcCGCUGGgcaccGcugcgccgccgccagGUCCUGGGg -3'
miRNA:   3'- -CCGGuGCGACUauuu-Caa-------------CAGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 39350 0.66 0.995604
Target:  5'- uGGCCcCGCUGGgcaccGcugcgccgccgccagGUCCUGGGg -3'
miRNA:   3'- -CCGGuGCGACUauuu-Caa-------------CAGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 39475 0.66 0.995604
Target:  5'- uGGCCcCGCUGGgcaccGcugcgccgccgccagGUCCUGGGg -3'
miRNA:   3'- -CCGGuGCGACUauuu-Caa-------------CAGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 39600 0.66 0.995604
Target:  5'- uGGCCcCGCUGGgcaccGcugcgccgccgccagGUCCUGGGg -3'
miRNA:   3'- -CCGGuGCGACUauuu-Caa-------------CAGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 39725 0.66 0.995604
Target:  5'- uGGCCcCGCUGGgcaccGcugcgccgccgccagGUCCUGGGg -3'
miRNA:   3'- -CCGGuGCGACUauuu-Caa-------------CAGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 42090 0.67 0.99233
Target:  5'- cGCCAUGCUGAUGGccacggucaagauGGagGagCUGGGu -3'
miRNA:   3'- cCGGUGCGACUAUU-------------UCaaCagGACCC- -5'
33616 5' -50.6 NC_007605.1 + 47186 0.68 0.98886
Target:  5'- aGGCCugGCgucacgcacucGGGgUGUCUUGGGg -3'
miRNA:   3'- -CCGGugCGacuau------UUCaACAGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 50764 0.69 0.968903
Target:  5'- uGGCCAUagggugggucCUGAgagGAGGcuugugUGUCCUGGGg -3'
miRNA:   3'- -CCGGUGc---------GACUa--UUUCa-----ACAGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 54172 0.68 0.988716
Target:  5'- aGGCCAgcCUGGgcgGGgcGGUUG-CCUGGGg -3'
miRNA:   3'- -CCGGUgcGACUa--UU--UCAACaGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 56272 0.8 0.515625
Target:  5'- gGGCCACGCUGG--GAGUccggcccuuUG-CCUGGGg -3'
miRNA:   3'- -CCGGUGCGACUauUUCA---------ACaGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 56947 0.66 0.995804
Target:  5'- aGCCAccCGCUGuAUGAGGaagGggccucggCCUGGGg -3'
miRNA:   3'- cCGGU--GCGAC-UAUUUCaa-Ca-------GGACCC- -5'
33616 5' -50.6 NC_007605.1 + 64335 0.74 0.817895
Target:  5'- aGGUguC-CUGGggaaUAGAGUUGUCCUGGGc -3'
miRNA:   3'- -CCGguGcGACU----AUUUCAACAGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 65535 0.67 0.993431
Target:  5'- gGGCCugGCcGAUGucuUUGcggaCCUGGGc -3'
miRNA:   3'- -CCGGugCGaCUAUuucAACa---GGACCC- -5'
33616 5' -50.6 NC_007605.1 + 71446 0.69 0.977181
Target:  5'- gGGCgAacugcCGCUGG--AGGUUG-CCUGGGa -3'
miRNA:   3'- -CCGgU-----GCGACUauUUCAACaGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 72007 0.67 0.992436
Target:  5'- cGGgCACGCUGAUGGAGaaa---UGGGc -3'
miRNA:   3'- -CCgGUGCGACUAUUUCaacaggACCC- -5'
33616 5' -50.6 NC_007605.1 + 77599 0.71 0.936938
Target:  5'- cGCUugGCUGGU--GGUg--CCUGGGc -3'
miRNA:   3'- cCGGugCGACUAuuUCAacaGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 81902 0.69 0.979541
Target:  5'- aGCCAgguUGCUGAUGuGGUccgGgcaCCUGGGg -3'
miRNA:   3'- cCGGU---GCGACUAUuUCAa--Ca--GGACCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.