miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33616 5' -50.6 NC_007605.1 + 8601 0.66 0.997424
Target:  5'- cGGCCugGggaccCUGcaGGAGggGaCCUGGGa -3'
miRNA:   3'- -CCGGugC-----GACuaUUUCaaCaGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 11156 0.68 0.981715
Target:  5'- aGGCgGgGCUGGgcAAAGggGUCCUacGGGc -3'
miRNA:   3'- -CCGgUgCGACUa-UUUCaaCAGGA--CCC- -5'
33616 5' -50.6 NC_007605.1 + 12497 0.69 0.971869
Target:  5'- gGGCCugGCUccgccGGGUgGcCCUGGGg -3'
miRNA:   3'- -CCGGugCGAcuau-UUCAaCaGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 15566 0.69 0.971869
Target:  5'- gGGCCugGCUccgccGGGUgGcCCUGGGg -3'
miRNA:   3'- -CCGGugCGAcuau-UUCAaCaGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 16221 0.67 0.990845
Target:  5'- uGCCACGCgccgcu--UUGUCCUGGa -3'
miRNA:   3'- cCGGUGCGacuauuucAACAGGACCc -5'
33616 5' -50.6 NC_007605.1 + 18635 0.69 0.971869
Target:  5'- gGGCCugGCUccgccGGGUgGcCCUGGGg -3'
miRNA:   3'- -CCGGugCGAcuau-UUCAaCaGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 21704 0.69 0.971869
Target:  5'- gGGCCugGCUccgccGGGUgGcCCUGGGg -3'
miRNA:   3'- -CCGGugCGAcuau-UUCAaCaGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 24773 0.69 0.971869
Target:  5'- gGGCCugGCUccgccGGGUgGcCCUGGGg -3'
miRNA:   3'- -CCGGugCGAcuau-UUCAaCaGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 27603 0.72 0.920926
Target:  5'- -aCCACGCUGG-AGGGacaUUGUCCaUGGGa -3'
miRNA:   3'- ccGGUGCGACUaUUUC---AACAGG-ACCC- -5'
33616 5' -50.6 NC_007605.1 + 27842 0.69 0.971869
Target:  5'- gGGCCugGCUccgccGGGUgGcCCUGGGg -3'
miRNA:   3'- -CCGGugCGAcuau-UUCAaCaGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 30911 0.68 0.987203
Target:  5'- gGGCCugGCUccgccGGGUgGcCCUGGGu -3'
miRNA:   3'- -CCGGugCGAcuau-UUCAaCaGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 33979 0.69 0.971869
Target:  5'- gGGCCugGCUccgccGGGUgGcCCUGGGg -3'
miRNA:   3'- -CCGGugCGAcuau-UUCAaCaGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 35290 0.67 0.994318
Target:  5'- gGGggACGCUGAUGAg---GUCCUGGc -3'
miRNA:   3'- -CCggUGCGACUAUUucaaCAGGACCc -5'
33616 5' -50.6 NC_007605.1 + 37270 0.66 0.996059
Target:  5'- aGCCcggggaaaagagaGCUGAUGGAGg---CCUGGGg -3'
miRNA:   3'- cCGGug-----------CGACUAUUUCaacaGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 37971 0.66 0.997424
Target:  5'- aGGUCugGCaGGUGccugacgucuGAGaaaaaGUCCUGGGu -3'
miRNA:   3'- -CCGGugCGaCUAU----------UUCaa---CAGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 38204 0.66 0.99518
Target:  5'- aGCCAgGCUGccggccaccaucagAGGGggGUCCgUGGGa -3'
miRNA:   3'- cCGGUgCGACua------------UUUCaaCAGG-ACCC- -5'
33616 5' -50.6 NC_007605.1 + 38351 0.66 0.995604
Target:  5'- uGGCCcCGCUGGgcaccGcugcgccgccgccagGUCCUGGGg -3'
miRNA:   3'- -CCGGuGCGACUauuu-Caa-------------CAGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 38476 0.66 0.995604
Target:  5'- uGGCCcCGCUGGgcaccGcugcgccgccgccagGUCCUGGGg -3'
miRNA:   3'- -CCGGuGCGACUauuu-Caa-------------CAGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 38601 0.66 0.995604
Target:  5'- uGGCCcCGCUGGgcaccGcugcgccgccgccagGUCCUGGGg -3'
miRNA:   3'- -CCGGuGCGACUauuu-Caa-------------CAGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 38726 0.66 0.995604
Target:  5'- uGGCCcCGCUGGgcaccGcugcgccgccgccagGUCCUGGGg -3'
miRNA:   3'- -CCGGuGCGACUauuu-Caa-------------CAGGACCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.