Results 1 - 20 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33616 | 5' | -50.6 | NC_007605.1 | + | 149618 | 0.67 | 0.990087 |
Target: 5'- gGGCU-CGCUGGUGuuuAGcUUGUCCccgcucUGGGu -3' miRNA: 3'- -CCGGuGCGACUAUu--UC-AACAGG------ACCC- -5' |
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33616 | 5' | -50.6 | NC_007605.1 | + | 27842 | 0.69 | 0.971869 |
Target: 5'- gGGCCugGCUccgccGGGUgGcCCUGGGg -3' miRNA: 3'- -CCGGugCGAcuau-UUCAaCaGGACCC- -5' |
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33616 | 5' | -50.6 | NC_007605.1 | + | 33979 | 0.69 | 0.971869 |
Target: 5'- gGGCCugGCUccgccGGGUgGcCCUGGGg -3' miRNA: 3'- -CCGGugCGAcuau-UUCAaCaGGACCC- -5' |
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33616 | 5' | -50.6 | NC_007605.1 | + | 81902 | 0.69 | 0.979541 |
Target: 5'- aGCCAgguUGCUGAUGuGGUccgGgcaCCUGGGg -3' miRNA: 3'- cCGGU---GCGACUAUuUCAa--Ca--GGACCC- -5' |
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33616 | 5' | -50.6 | NC_007605.1 | + | 11156 | 0.68 | 0.981715 |
Target: 5'- aGGCgGgGCUGGgcAAAGggGUCCUacGGGc -3' miRNA: 3'- -CCGgUgCGACUa-UUUCaaCAGGA--CCC- -5' |
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33616 | 5' | -50.6 | NC_007605.1 | + | 148506 | 0.68 | 0.987043 |
Target: 5'- uGGCaCAgGCUGGggguGAGUcuggggaUGUCcCUGGGc -3' miRNA: 3'- -CCG-GUgCGACUau--UUCA-------ACAG-GACCC- -5' |
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33616 | 5' | -50.6 | NC_007605.1 | + | 30911 | 0.68 | 0.987203 |
Target: 5'- gGGCCugGCUccgccGGGUgGcCCUGGGu -3' miRNA: 3'- -CCGGugCGAcuau-UUCAaCaGGACCC- -5' |
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33616 | 5' | -50.6 | NC_007605.1 | + | 54172 | 0.68 | 0.988716 |
Target: 5'- aGGCCAgcCUGGgcgGGgcGGUUG-CCUGGGg -3' miRNA: 3'- -CCGGUgcGACUa--UU--UCAACaGGACCC- -5' |
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33616 | 5' | -50.6 | NC_007605.1 | + | 47186 | 0.68 | 0.98886 |
Target: 5'- aGGCCugGCgucacgcacucGGGgUGUCUUGGGg -3' miRNA: 3'- -CCGGugCGacuau------UUCaACAGGACCC- -5' |
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33616 | 5' | -50.6 | NC_007605.1 | + | 24773 | 0.69 | 0.971869 |
Target: 5'- gGGCCugGCUccgccGGGUgGcCCUGGGg -3' miRNA: 3'- -CCGGugCGAcuau-UUCAaCaGGACCC- -5' |
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33616 | 5' | -50.6 | NC_007605.1 | + | 21704 | 0.69 | 0.971869 |
Target: 5'- gGGCCugGCUccgccGGGUgGcCCUGGGg -3' miRNA: 3'- -CCGGugCGAcuau-UUCAaCaGGACCC- -5' |
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33616 | 5' | -50.6 | NC_007605.1 | + | 18635 | 0.69 | 0.971869 |
Target: 5'- gGGCCugGCUccgccGGGUgGcCCUGGGg -3' miRNA: 3'- -CCGGugCGAcuau-UUCAaCaGGACCC- -5' |
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33616 | 5' | -50.6 | NC_007605.1 | + | 112347 | 0.74 | 0.835193 |
Target: 5'- gGGCCuCGUgccaGGgccuGUUGUCCUGGGg -3' miRNA: 3'- -CCGGuGCGa---CUauuuCAACAGGACCC- -5' |
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33616 | 5' | -50.6 | NC_007605.1 | + | 129103 | 0.74 | 0.835193 |
Target: 5'- cGGCCGC-CUGGUccAgcGUUGccUCCUGGGg -3' miRNA: 3'- -CCGGUGcGACUA--UuuCAAC--AGGACCC- -5' |
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33616 | 5' | -50.6 | NC_007605.1 | + | 77599 | 0.71 | 0.936938 |
Target: 5'- cGCUugGCUGGU--GGUg--CCUGGGc -3' miRNA: 3'- cCGGugCGACUAuuUCAacaGGACCC- -5' |
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33616 | 5' | -50.6 | NC_007605.1 | + | 115677 | 0.71 | 0.946367 |
Target: 5'- cGGCCACGUgGAaGGGGUUGUagagcUCUGGa -3' miRNA: 3'- -CCGGUGCGaCUaUUUCAACA-----GGACCc -5' |
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33616 | 5' | -50.6 | NC_007605.1 | + | 133984 | 0.7 | 0.950713 |
Target: 5'- cGGCCGCGCUGAacg---UGcCCgGGGc -3' miRNA: 3'- -CCGGUGCGACUauuucaACaGGaCCC- -5' |
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33616 | 5' | -50.6 | NC_007605.1 | + | 50764 | 0.69 | 0.968903 |
Target: 5'- uGGCCAUagggugggucCUGAgagGAGGcuugugUGUCCUGGGg -3' miRNA: 3'- -CCGGUGc---------GACUa--UUUCa-----ACAGGACCC- -5' |
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33616 | 5' | -50.6 | NC_007605.1 | + | 12497 | 0.69 | 0.971869 |
Target: 5'- gGGCCugGCUccgccGGGUgGcCCUGGGg -3' miRNA: 3'- -CCGGugCGAcuau-UUCAaCaGGACCC- -5' |
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33616 | 5' | -50.6 | NC_007605.1 | + | 15566 | 0.69 | 0.971869 |
Target: 5'- gGGCCugGCUccgccGGGUgGcCCUGGGg -3' miRNA: 3'- -CCGGugCGAcuau-UUCAaCaGGACCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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