miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33616 5' -50.6 NC_007605.1 + 160884 1.13 0.00622
Target:  5'- cGGCCACGCUGAUAAAGUUGUCCUGGGc -3'
miRNA:   3'- -CCGGUGCGACUAUUUCAACAGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 56272 0.8 0.515625
Target:  5'- gGGCCACGCUGG--GAGUccggcccuuUG-CCUGGGg -3'
miRNA:   3'- -CCGGUGCGACUauUUCA---------ACaGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 64335 0.74 0.817895
Target:  5'- aGGUguC-CUGGggaaUAGAGUUGUCCUGGGc -3'
miRNA:   3'- -CCGguGcGACU----AUUUCAACAGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 112347 0.74 0.835193
Target:  5'- gGGCCuCGUgccaGGgccuGUUGUCCUGGGg -3'
miRNA:   3'- -CCGGuGCGa---CUauuuCAACAGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 129103 0.74 0.835193
Target:  5'- cGGCCGC-CUGGUccAgcGUUGccUCCUGGGg -3'
miRNA:   3'- -CCGGUGcGACUA--UuuCAAC--AGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 27603 0.72 0.920926
Target:  5'- -aCCACGCUGG-AGGGacaUUGUCCaUGGGa -3'
miRNA:   3'- ccGGUGCGACUaUUUC---AACAGG-ACCC- -5'
33616 5' -50.6 NC_007605.1 + 77599 0.71 0.936938
Target:  5'- cGCUugGCUGGU--GGUg--CCUGGGc -3'
miRNA:   3'- cCGGugCGACUAuuUCAacaGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 115677 0.71 0.946367
Target:  5'- cGGCCACGUgGAaGGGGUUGUagagcUCUGGa -3'
miRNA:   3'- -CCGGUGCGaCUaUUUCAACA-----GGACCc -5'
33616 5' -50.6 NC_007605.1 + 133984 0.7 0.950713
Target:  5'- cGGCCGCGCUGAacg---UGcCCgGGGc -3'
miRNA:   3'- -CCGGUGCGACUauuucaACaGGaCCC- -5'
33616 5' -50.6 NC_007605.1 + 108057 0.7 0.958683
Target:  5'- aGCCACGCguccaGAUccacAAAGgccUCCUGGGg -3'
miRNA:   3'- cCGGUGCGa----CUA----UUUCaacAGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 50764 0.69 0.968903
Target:  5'- uGGCCAUagggugggucCUGAgagGAGGcuugugUGUCCUGGGg -3'
miRNA:   3'- -CCGGUGc---------GACUa--UUUCa-----ACAGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 33979 0.69 0.971869
Target:  5'- gGGCCugGCUccgccGGGUgGcCCUGGGg -3'
miRNA:   3'- -CCGGugCGAcuau-UUCAaCaGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 27842 0.69 0.971869
Target:  5'- gGGCCugGCUccgccGGGUgGcCCUGGGg -3'
miRNA:   3'- -CCGGugCGAcuau-UUCAaCaGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 24773 0.69 0.971869
Target:  5'- gGGCCugGCUccgccGGGUgGcCCUGGGg -3'
miRNA:   3'- -CCGGugCGAcuau-UUCAaCaGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 18635 0.69 0.971869
Target:  5'- gGGCCugGCUccgccGGGUgGcCCUGGGg -3'
miRNA:   3'- -CCGGugCGAcuau-UUCAaCaGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 15566 0.69 0.971869
Target:  5'- gGGCCugGCUccgccGGGUgGcCCUGGGg -3'
miRNA:   3'- -CCGGugCGAcuau-UUCAaCaGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 12497 0.69 0.971869
Target:  5'- gGGCCugGCUccgccGGGUgGcCCUGGGg -3'
miRNA:   3'- -CCGGugCGAcuau-UUCAaCaGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 21704 0.69 0.971869
Target:  5'- gGGCCugGCUccgccGGGUgGcCCUGGGg -3'
miRNA:   3'- -CCGGugCGAcuau-UUCAaCaGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 71446 0.69 0.977181
Target:  5'- gGGCgAacugcCGCUGG--AGGUUG-CCUGGGa -3'
miRNA:   3'- -CCGgU-----GCGACUauUUCAACaGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 81902 0.69 0.979541
Target:  5'- aGCCAgguUGCUGAUGuGGUccgGgcaCCUGGGg -3'
miRNA:   3'- cCGGU---GCGACUAUuUCAa--Ca--GGACCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.