Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33617 | 5' | -56.3 | NC_007605.1 | + | 87228 | 0.68 | 0.776268 |
Target: 5'- cGCUGGAGGaccacuGUGGggGCCuGGGa-- -3' miRNA: 3'- -CGACCUCCgu----UACCagCGGuCCCaaa -5' |
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33617 | 5' | -56.3 | NC_007605.1 | + | 157041 | 0.67 | 0.829807 |
Target: 5'- --aGGGGGCGcgaguagcacAUGGUCucggaGCCAGGGa-- -3' miRNA: 3'- cgaCCUCCGU----------UACCAG-----CGGUCCCaaa -5' |
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33617 | 5' | -56.3 | NC_007605.1 | + | 148669 | 0.67 | 0.854238 |
Target: 5'- --cGGGGGuCGGgcugGGcCGCCAGGGg-- -3' miRNA: 3'- cgaCCUCC-GUUa---CCaGCGGUCCCaaa -5' |
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33617 | 5' | -56.3 | NC_007605.1 | + | 136393 | 0.67 | 0.854238 |
Target: 5'- --cGGGGGuCGGgcugGGcCGCCAGGGg-- -3' miRNA: 3'- cgaCCUCC-GUUa---CCaGCGGUCCCaaa -5' |
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33617 | 5' | -56.3 | NC_007605.1 | + | 139462 | 0.67 | 0.854238 |
Target: 5'- --cGGGGGuCGGgcugGGcCGCCAGGGg-- -3' miRNA: 3'- cgaCCUCC-GUUa---CCaGCGGUCCCaaa -5' |
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33617 | 5' | -56.3 | NC_007605.1 | + | 142531 | 0.67 | 0.854238 |
Target: 5'- --cGGGGGuCGGgcugGGcCGCCAGGGg-- -3' miRNA: 3'- cgaCCUCC-GUUa---CCaGCGGUCCCaaa -5' |
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33617 | 5' | -56.3 | NC_007605.1 | + | 145600 | 0.67 | 0.854238 |
Target: 5'- --cGGGGGuCGGgcugGGcCGCCAGGGg-- -3' miRNA: 3'- cgaCCUCC-GUUa---CCaGCGGUCCCaaa -5' |
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33617 | 5' | -56.3 | NC_007605.1 | + | 154806 | 0.67 | 0.854238 |
Target: 5'- --cGGGGGuCGGgcugGGcCGCCAGGGg-- -3' miRNA: 3'- cgaCCUCC-GUUa---CCaGCGGUCCCaaa -5' |
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33617 | 5' | -56.3 | NC_007605.1 | + | 151737 | 0.67 | 0.854238 |
Target: 5'- --cGGGGGuCGGgcugGGcCGCCAGGGg-- -3' miRNA: 3'- cgaCCUCC-GUUa---CCaGCGGUCCCaaa -5' |
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33617 | 5' | -56.3 | NC_007605.1 | + | 157875 | 0.67 | 0.854238 |
Target: 5'- --cGGGGGuCGGgcugGGcCGCCAGGGg-- -3' miRNA: 3'- cgaCCUCC-GUUa---CCaGCGGUCCCaaa -5' |
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33617 | 5' | -56.3 | NC_007605.1 | + | 12533 | 0.66 | 0.869522 |
Target: 5'- --gGGAGGCAGagGGUCGgccuaggcCCGGGGa-- -3' miRNA: 3'- cgaCCUCCGUUa-CCAGC--------GGUCCCaaa -5' |
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33617 | 5' | -56.3 | NC_007605.1 | + | 15602 | 0.66 | 0.869522 |
Target: 5'- --gGGAGGCAGagGGUCGgccuaggcCCGGGGa-- -3' miRNA: 3'- cgaCCUCCGUUa-CCAGC--------GGUCCCaaa -5' |
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33617 | 5' | -56.3 | NC_007605.1 | + | 18671 | 0.66 | 0.869522 |
Target: 5'- --gGGAGGCAGagGGUCGgccuaggcCCGGGGa-- -3' miRNA: 3'- cgaCCUCCGUUa-CCAGC--------GGUCCCaaa -5' |
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33617 | 5' | -56.3 | NC_007605.1 | + | 24809 | 0.66 | 0.869522 |
Target: 5'- --gGGAGGCAGagGGUCGgccuaggcCCGGGGa-- -3' miRNA: 3'- cgaCCUCCGUUa-CCAGC--------GGUCCCaaa -5' |
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33617 | 5' | -56.3 | NC_007605.1 | + | 21740 | 0.66 | 0.869522 |
Target: 5'- --gGGAGGCAGagGGUCGgccuaggcCCGGGGa-- -3' miRNA: 3'- cgaCCUCCGUUa-CCAGC--------GGUCCCaaa -5' |
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33617 | 5' | -56.3 | NC_007605.1 | + | 27878 | 0.66 | 0.869522 |
Target: 5'- --gGGAGGCAGagGGUCGgccuaggcCCGGGGa-- -3' miRNA: 3'- cgaCCUCCGUUa-CCAGC--------GGUCCCaaa -5' |
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33617 | 5' | -56.3 | NC_007605.1 | + | 30946 | 0.66 | 0.869522 |
Target: 5'- --gGGAGGCAGagGGUCGgccuaggcCCGGGGa-- -3' miRNA: 3'- cgaCCUCCGUUa-CCAGC--------GGUCCCaaa -5' |
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33617 | 5' | -56.3 | NC_007605.1 | + | 34015 | 0.66 | 0.869522 |
Target: 5'- --gGGAGGCAGagGGUCGgccuaggcCCGGGGa-- -3' miRNA: 3'- cgaCCUCCGUUa-CCAGC--------GGUCCCaaa -5' |
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33617 | 5' | -56.3 | NC_007605.1 | + | 96519 | 0.66 | 0.869522 |
Target: 5'- aGCaGGAGGgGcaggagcaggagGUGGagGCCGGGGUc- -3' miRNA: 3'- -CGaCCUCCgU------------UACCagCGGUCCCAaa -5' |
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33617 | 5' | -56.3 | NC_007605.1 | + | 63606 | 0.66 | 0.883945 |
Target: 5'- cGCcgggGGuGGCGGUGGaguaugcuUCGUCGGGGg-- -3' miRNA: 3'- -CGa---CCuCCGUUACC--------AGCGGUCCCaaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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