miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33617 5' -56.3 NC_007605.1 + 12533 0.66 0.869522
Target:  5'- --gGGAGGCAGagGGUCGgccuaggcCCGGGGa-- -3'
miRNA:   3'- cgaCCUCCGUUa-CCAGC--------GGUCCCaaa -5'
33617 5' -56.3 NC_007605.1 + 15602 0.66 0.869522
Target:  5'- --gGGAGGCAGagGGUCGgccuaggcCCGGGGa-- -3'
miRNA:   3'- cgaCCUCCGUUa-CCAGC--------GGUCCCaaa -5'
33617 5' -56.3 NC_007605.1 + 18671 0.66 0.869522
Target:  5'- --gGGAGGCAGagGGUCGgccuaggcCCGGGGa-- -3'
miRNA:   3'- cgaCCUCCGUUa-CCAGC--------GGUCCCaaa -5'
33617 5' -56.3 NC_007605.1 + 20508 0.75 0.430327
Target:  5'- aGCUGG-GGCAcgGGcCGCCgAGGGg-- -3'
miRNA:   3'- -CGACCuCCGUuaCCaGCGG-UCCCaaa -5'
33617 5' -56.3 NC_007605.1 + 21740 0.66 0.869522
Target:  5'- --gGGAGGCAGagGGUCGgccuaggcCCGGGGa-- -3'
miRNA:   3'- cgaCCUCCGUUa-CCAGC--------GGUCCCaaa -5'
33617 5' -56.3 NC_007605.1 + 24809 0.66 0.869522
Target:  5'- --gGGAGGCAGagGGUCGgccuaggcCCGGGGa-- -3'
miRNA:   3'- cgaCCUCCGUUa-CCAGC--------GGUCCCaaa -5'
33617 5' -56.3 NC_007605.1 + 27878 0.66 0.869522
Target:  5'- --gGGAGGCAGagGGUCGgccuaggcCCGGGGa-- -3'
miRNA:   3'- cgaCCUCCGUUa-CCAGC--------GGUCCCaaa -5'
33617 5' -56.3 NC_007605.1 + 30946 0.66 0.869522
Target:  5'- --gGGAGGCAGagGGUCGgccuaggcCCGGGGa-- -3'
miRNA:   3'- cgaCCUCCGUUa-CCAGC--------GGUCCCaaa -5'
33617 5' -56.3 NC_007605.1 + 34015 0.66 0.869522
Target:  5'- --gGGAGGCAGagGGUCGgccuaggcCCGGGGa-- -3'
miRNA:   3'- cgaCCUCCGUUa-CCAGC--------GGUCCCaaa -5'
33617 5' -56.3 NC_007605.1 + 39968 0.7 0.667411
Target:  5'- gGCUGGGGGCuggGGUC-CCGGGa--- -3'
miRNA:   3'- -CGACCUCCGuuaCCAGcGGUCCcaaa -5'
33617 5' -56.3 NC_007605.1 + 45171 0.7 0.687817
Target:  5'- --aGGAGGCAggggcccugcgaAUGGUCGCCAGccuccGGUc- -3'
miRNA:   3'- cgaCCUCCGU------------UACCAGCGGUC-----CCAaa -5'
33617 5' -56.3 NC_007605.1 + 48438 0.66 0.895497
Target:  5'- gGC-GGGGGCGuaggggaggagcucGUGGggGCCGGGGg-- -3'
miRNA:   3'- -CGaCCUCCGU--------------UACCagCGGUCCCaaa -5'
33617 5' -56.3 NC_007605.1 + 50275 0.73 0.534825
Target:  5'- aUUGGGGGCAAUGGgaUUGCgGGGGa-- -3'
miRNA:   3'- cGACCUCCGUUACC--AGCGgUCCCaaa -5'
33617 5' -56.3 NC_007605.1 + 51375 0.69 0.737855
Target:  5'- uGCUGGAGcCGGUcggaGGagGCCGGGGUg- -3'
miRNA:   3'- -CGACCUCcGUUA----CCagCGGUCCCAaa -5'
33617 5' -56.3 NC_007605.1 + 58047 0.7 0.667411
Target:  5'- gGCUGGAGGCcggggccgcGGagGCCGGGGc-- -3'
miRNA:   3'- -CGACCUCCGuua------CCagCGGUCCCaaa -5'
33617 5' -56.3 NC_007605.1 + 63083 0.76 0.346513
Target:  5'- --gGGAGGUGGcGGUCGCCGGGGg-- -3'
miRNA:   3'- cgaCCUCCGUUaCCAGCGGUCCCaaa -5'
33617 5' -56.3 NC_007605.1 + 63606 0.66 0.883945
Target:  5'- cGCcgggGGuGGCGGUGGaguaugcuUCGUCGGGGg-- -3'
miRNA:   3'- -CGa---CCuCCGUUACC--------AGCGGUCCCaaa -5'
33617 5' -56.3 NC_007605.1 + 69518 0.69 0.766837
Target:  5'- uCUGuGGGGCGAUGGcCuCCGGGGg-- -3'
miRNA:   3'- cGAC-CUCCGUUACCaGcGGUCCCaaa -5'
33617 5' -56.3 NC_007605.1 + 78137 0.66 0.897466
Target:  5'- gGCUGGuGGCAuuuggGGUugggguagucacUGCUGGGGUg- -3'
miRNA:   3'- -CGACCuCCGUua---CCA------------GCGGUCCCAaa -5'
33617 5' -56.3 NC_007605.1 + 78179 0.66 0.897466
Target:  5'- gGCUGGuGGCAuuuggGGUugggguagucacUGCUGGGGUg- -3'
miRNA:   3'- -CGACCuCCGUua---CCA------------GCGGUCCCAaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.