miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33617 5' -56.3 NC_007605.1 + 21740 0.66 0.869522
Target:  5'- --gGGAGGCAGagGGUCGgccuaggcCCGGGGa-- -3'
miRNA:   3'- cgaCCUCCGUUa-CCAGC--------GGUCCCaaa -5'
33617 5' -56.3 NC_007605.1 + 58047 0.7 0.667411
Target:  5'- gGCUGGAGGCcggggccgcGGagGCCGGGGc-- -3'
miRNA:   3'- -CGACCUCCGuua------CCagCGGUCCCaaa -5'
33617 5' -56.3 NC_007605.1 + 45171 0.7 0.687817
Target:  5'- --aGGAGGCAggggcccugcgaAUGGUCGCCAGccuccGGUc- -3'
miRNA:   3'- cgaCCUCCGU------------UACCAGCGGUC-----CCAaa -5'
33617 5' -56.3 NC_007605.1 + 51375 0.69 0.737855
Target:  5'- uGCUGGAGcCGGUcggaGGagGCCGGGGUg- -3'
miRNA:   3'- -CGACCUCcGUUA----CCagCGGUCCCAaa -5'
33617 5' -56.3 NC_007605.1 + 69518 0.69 0.766837
Target:  5'- uCUGuGGGGCGAUGGcCuCCGGGGg-- -3'
miRNA:   3'- cGAC-CUCCGUUACCaGcGGUCCCaaa -5'
33617 5' -56.3 NC_007605.1 + 157041 0.67 0.829807
Target:  5'- --aGGGGGCGcgaguagcacAUGGUCucggaGCCAGGGa-- -3'
miRNA:   3'- cgaCCUCCGU----------UACCAG-----CGGUCCCaaa -5'
33617 5' -56.3 NC_007605.1 + 12533 0.66 0.869522
Target:  5'- --gGGAGGCAGagGGUCGgccuaggcCCGGGGa-- -3'
miRNA:   3'- cgaCCUCCGUUa-CCAGC--------GGUCCCaaa -5'
33617 5' -56.3 NC_007605.1 + 15602 0.66 0.869522
Target:  5'- --gGGAGGCAGagGGUCGgccuaggcCCGGGGa-- -3'
miRNA:   3'- cgaCCUCCGUUa-CCAGC--------GGUCCCaaa -5'
33617 5' -56.3 NC_007605.1 + 18671 0.66 0.869522
Target:  5'- --gGGAGGCAGagGGUCGgccuaggcCCGGGGa-- -3'
miRNA:   3'- cgaCCUCCGUUa-CCAGC--------GGUCCCaaa -5'
33617 5' -56.3 NC_007605.1 + 39968 0.7 0.667411
Target:  5'- gGCUGGGGGCuggGGUC-CCGGGa--- -3'
miRNA:   3'- -CGACCUCCGuuaCCAGcGGUCCcaaa -5'
33617 5' -56.3 NC_007605.1 + 171286 0.71 0.605768
Target:  5'- --aGGGGGCAG-GGUCGCagGGGGUg- -3'
miRNA:   3'- cgaCCUCCGUUaCCAGCGg-UCCCAaa -5'
33617 5' -56.3 NC_007605.1 + 170748 0.71 0.605768
Target:  5'- --aGGGGGCAG-GGUCGCagGGGGUg- -3'
miRNA:   3'- cgaCCUCCGUUaCCAGCGg-UCCCAaa -5'
33617 5' -56.3 NC_007605.1 + 96558 0.82 0.155555
Target:  5'- --aGGAGGCAGUGGagGCCGGGGUc- -3'
miRNA:   3'- cgaCCUCCGUUACCagCGGUCCCAaa -5'
33617 5' -56.3 NC_007605.1 + 96582 0.79 0.256044
Target:  5'- --aGGAGGUAGUGGagGCCGGGGUc- -3'
miRNA:   3'- cgaCCUCCGUUACCagCGGUCCCAaa -5'
33617 5' -56.3 NC_007605.1 + 157466 0.79 0.256044
Target:  5'- gGCUGGGGGCGAUGGacUGCUGGGGg-- -3'
miRNA:   3'- -CGACCUCCGUUACCa-GCGGUCCCaaa -5'
33617 5' -56.3 NC_007605.1 + 96606 0.77 0.323756
Target:  5'- --aGGAGGUAGUGGaggcCGCCGGGGUa- -3'
miRNA:   3'- cgaCCUCCGUUACCa---GCGGUCCCAaa -5'
33617 5' -56.3 NC_007605.1 + 63083 0.76 0.346513
Target:  5'- --gGGAGGUGGcGGUCGCCGGGGg-- -3'
miRNA:   3'- cgaCCUCCGUUaCCAGCGGUCCCaaa -5'
33617 5' -56.3 NC_007605.1 + 50275 0.73 0.534825
Target:  5'- aUUGGGGGCAAUGGgaUUGCgGGGGa-- -3'
miRNA:   3'- cGACCUCCGUUACC--AGCGgUCCCaaa -5'
33617 5' -56.3 NC_007605.1 + 169688 0.71 0.605768
Target:  5'- --aGGGGGCAG-GGUCGCagGGGGUg- -3'
miRNA:   3'- cgaCCUCCGUUaCCAGCGg-UCCCAaa -5'
33617 5' -56.3 NC_007605.1 + 170226 0.71 0.605768
Target:  5'- --aGGGGGCAG-GGUCGCagGGGGUg- -3'
miRNA:   3'- cgaCCUCCGUUaCCAGCGg-UCCCAaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.