miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33618 5' -55.1 NC_007605.1 + 56502 0.67 0.931287
Target:  5'- cCCGUcgggCCAUucguGAGuccAGGGCCcuGGUCAGGg -3'
miRNA:   3'- -GGCA----GGUGu---UUC---UCCCGGu-CCAGUCU- -5'
33618 5' -55.1 NC_007605.1 + 58055 0.69 0.829559
Target:  5'- gCCGgggCCGCGGAGgccGGGGCCgcggAGGcCGGGg -3'
miRNA:   3'- -GGCa--GGUGUUUC---UCCCGG----UCCaGUCU- -5'
33618 5' -55.1 NC_007605.1 + 58100 0.7 0.821141
Target:  5'- gCCGgggCCGCGGAGgccggggccgcGGaGGCCGGGgccgCAGAg -3'
miRNA:   3'- -GGCa--GGUGUUUC-----------UC-CCGGUCCa---GUCU- -5'
33618 5' -55.1 NC_007605.1 + 58145 0.72 0.669209
Target:  5'- gCCGgggCCGCAGAGgccGGGGCCgcagAGGcCGGAg -3'
miRNA:   3'- -GGCa--GGUGUUUC---UCCCGG----UCCaGUCU- -5'
33618 5' -55.1 NC_007605.1 + 60950 0.69 0.86139
Target:  5'- -gGUCaGCucgggggaAGGGAGGGCCAGGUCGc- -3'
miRNA:   3'- ggCAGgUG--------UUUCUCCCGGUCCAGUcu -5'
33618 5' -55.1 NC_007605.1 + 69097 0.71 0.76736
Target:  5'- aCCGUUCcgGCAAAGAuGGCCGGGgggaAGAg -3'
miRNA:   3'- -GGCAGG--UGUUUCUcCCGGUCCag--UCU- -5'
33618 5' -55.1 NC_007605.1 + 71100 0.66 0.936252
Target:  5'- -gGUCUugGAu--GGGCUcuaGGGUCAGAg -3'
miRNA:   3'- ggCAGGugUUucuCCCGG---UCCAGUCU- -5'
33618 5' -55.1 NC_007605.1 + 74429 0.67 0.909071
Target:  5'- gCGggCCAgGuuGuGGGCCGGGUcCAGGg -3'
miRNA:   3'- gGCa-GGUgUuuCuCCCGGUCCA-GUCU- -5'
33618 5' -55.1 NC_007605.1 + 75663 0.73 0.659087
Target:  5'- aCgGUCUgauggGgGAAGAGGGCCAGGUCc-- -3'
miRNA:   3'- -GgCAGG-----UgUUUCUCCCGGUCCAGucu -5'
33618 5' -55.1 NC_007605.1 + 91305 0.66 0.953785
Target:  5'- cUCGggggUUACugcGGGGGCCGGGUCAa- -3'
miRNA:   3'- -GGCa---GGUGuuuCUCCCGGUCCAGUcu -5'
33618 5' -55.1 NC_007605.1 + 95567 0.7 0.812553
Target:  5'- aUGUCUgACGA--GGGGCCAGGUaCAGGa -3'
miRNA:   3'- gGCAGG-UGUUucUCCCGGUCCA-GUCU- -5'
33618 5' -55.1 NC_007605.1 + 102123 0.67 0.920649
Target:  5'- aUCGccCCACAgagaAAGAGGGgCAGGUaucUAGAg -3'
miRNA:   3'- -GGCa-GGUGU----UUCUCCCgGUCCA---GUCU- -5'
33618 5' -55.1 NC_007605.1 + 104664 0.68 0.889295
Target:  5'- uUCGgcgCCGCcc-GGGGGCCagucuccGGGUCAGGu -3'
miRNA:   3'- -GGCa--GGUGuuuCUCCCGG-------UCCAGUCU- -5'
33618 5' -55.1 NC_007605.1 + 105536 0.78 0.374891
Target:  5'- -gGUCCACAAAGGGGGCCcuGUCccgGGAc -3'
miRNA:   3'- ggCAGGUGUUUCUCCCGGucCAG---UCU- -5'
33618 5' -55.1 NC_007605.1 + 106093 0.67 0.920649
Target:  5'- -gGUCCGCAAAGAcaucGGCCAGGcCc-- -3'
miRNA:   3'- ggCAGGUGUUUCUc---CCGGUCCaGucu -5'
33618 5' -55.1 NC_007605.1 + 108244 0.7 0.785854
Target:  5'- gCCG-CC-CAAAGuccGGGaCCAGGUCAGc -3'
miRNA:   3'- -GGCaGGuGUUUCu--CCC-GGUCCAGUCu -5'
33618 5' -55.1 NC_007605.1 + 110339 0.69 0.86139
Target:  5'- gCCGUCUGCGcccccacGGGGCCacacgccgagGGGUCAGGg -3'
miRNA:   3'- -GGCAGGUGUuuc----UCCCGG----------UCCAGUCU- -5'
33618 5' -55.1 NC_007605.1 + 114560 0.66 0.957598
Target:  5'- cCCGUCCGauguGGuGGCCAGGU-GGAc -3'
miRNA:   3'- -GGCAGGUguuuCUcCCGGUCCAgUCU- -5'
33618 5' -55.1 NC_007605.1 + 116699 0.68 0.902932
Target:  5'- aCCG-CCACGuAGAcgcGGGCCaccguccggggaAGGUCAGu -3'
miRNA:   3'- -GGCaGGUGUuUCU---CCCGG------------UCCAGUCu -5'
33618 5' -55.1 NC_007605.1 + 117127 0.66 0.957598
Target:  5'- aCCG-CCAaagaaggagGAGGAGGGCgAGGagCGGAg -3'
miRNA:   3'- -GGCaGGUg--------UUUCUCCCGgUCCa-GUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.