miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33618 5' -55.1 NC_007605.1 + 4983 0.66 0.939118
Target:  5'- uCUGgCCACGGAGgaguucauGGGGCCAGGgacucugcccuggCAGGc -3'
miRNA:   3'- -GGCaGGUGUUUC--------UCCCGGUCCa------------GUCU- -5'
33618 5' -55.1 NC_007605.1 + 14723 0.66 0.936252
Target:  5'- cCCaGUCCuacCAGAGGGGGCCAaGaaccCAGAc -3'
miRNA:   3'- -GG-CAGGu--GUUUCUCCCGGUcCa---GUCU- -5'
33618 5' -55.1 NC_007605.1 + 17792 0.66 0.936252
Target:  5'- cCCaGUCCuacCAGAGGGGGCCAaGaaccCAGAc -3'
miRNA:   3'- -GG-CAGGu--GUUUCUCCCGGUcCa---GUCU- -5'
33618 5' -55.1 NC_007605.1 + 20861 0.66 0.936252
Target:  5'- cCCaGUCCuacCAGAGGGGGCCAaGaaccCAGAc -3'
miRNA:   3'- -GG-CAGGu--GUUUCUCCCGGUcCa---GUCU- -5'
33618 5' -55.1 NC_007605.1 + 23930 0.72 0.669209
Target:  5'- cCCaGUCCuacCAGAGGGGGCCAGaaccCAGAc -3'
miRNA:   3'- -GG-CAGGu--GUUUCUCCCGGUCca--GUCU- -5'
33618 5' -55.1 NC_007605.1 + 26998 0.66 0.936252
Target:  5'- cCCaGUCCuacCAGAGGGGGCCAaGaaccCAGAc -3'
miRNA:   3'- -GG-CAGGu--GUUUCUCCCGGUcCa---GUCU- -5'
33618 5' -55.1 NC_007605.1 + 27620 0.67 0.931287
Target:  5'- uUGUCCaugggACAAGGcacaGGCCAGGUCAuGAc -3'
miRNA:   3'- gGCAGG-----UGUUUCuc--CCGGUCCAGU-CU- -5'
33618 5' -55.1 NC_007605.1 + 30067 0.66 0.936252
Target:  5'- cCCaGUCCuacCAGAGGGGGCCAaGaaccCAGAc -3'
miRNA:   3'- -GG-CAGGu--GUUUCUCCCGGUcCa---GUCU- -5'
33618 5' -55.1 NC_007605.1 + 33136 0.66 0.936252
Target:  5'- cCCaGUCCuacCAGAGGGGGCCAaGaaccCAGAc -3'
miRNA:   3'- -GG-CAGGu--GUUUCUCCCGGUcCa---GUCU- -5'
33618 5' -55.1 NC_007605.1 + 40397 0.7 0.821141
Target:  5'- gCCG-CCGCAAGGAcgccGGGCCGGcUgGGAg -3'
miRNA:   3'- -GGCaGGUGUUUCU----CCCGGUCcAgUCU- -5'
33618 5' -55.1 NC_007605.1 + 44204 0.68 0.902932
Target:  5'- cCCGaggCACgGAAGAGGGCCGGGaUGGGu -3'
miRNA:   3'- -GGCag-GUG-UUUCUCCCGGUCCaGUCU- -5'
33618 5' -55.1 NC_007605.1 + 45153 0.72 0.689357
Target:  5'- -aGUCCAaacauGGGGGCCAGGaggCAGGg -3'
miRNA:   3'- ggCAGGUguuu-CUCCCGGUCCa--GUCU- -5'
33618 5' -55.1 NC_007605.1 + 45862 0.67 0.920649
Target:  5'- -gGUCUGCGGAGA-GGCguGGUaCAGAg -3'
miRNA:   3'- ggCAGGUGUUUCUcCCGguCCA-GUCU- -5'
33618 5' -55.1 NC_007605.1 + 47774 0.73 0.638785
Target:  5'- uUGUCCGCu----GGGCCAGGUCAc- -3'
miRNA:   3'- gGCAGGUGuuucuCCCGGUCCAGUcu -5'
33618 5' -55.1 NC_007605.1 + 48255 0.73 0.618463
Target:  5'- aUG-CCGgGGAGAGGGCCAGGcaCAGGg -3'
miRNA:   3'- gGCaGGUgUUUCUCCCGGUCCa-GUCU- -5'
33618 5' -55.1 NC_007605.1 + 48411 0.66 0.940983
Target:  5'- gCCGUCuCugAGGGGGGGagaaagaCGGG-CGGGg -3'
miRNA:   3'- -GGCAG-GugUUUCUCCCg------GUCCaGUCU- -5'
33618 5' -55.1 NC_007605.1 + 53077 0.68 0.883147
Target:  5'- gUGUCUGCGGAGAcguaGGCCGGGUUAa- -3'
miRNA:   3'- gGCAGGUGUUUCUc---CCGGUCCAGUcu -5'
33618 5' -55.1 NC_007605.1 + 54456 0.67 0.920649
Target:  5'- gCCGUCCugGcgcgaAAGAGGGCCccGGcCGc- -3'
miRNA:   3'- -GGCAGGugU-----UUCUCCCGGu-CCaGUcu -5'
33618 5' -55.1 NC_007605.1 + 55786 0.66 0.94548
Target:  5'- gCGUgCCAaacugcGAGGGGGCCuGGUgcCAGAc -3'
miRNA:   3'- gGCA-GGUgu----UUCUCCCGGuCCA--GUCU- -5'
33618 5' -55.1 NC_007605.1 + 56442 0.69 0.853723
Target:  5'- gCGg-CACuguGGGGGUCGGGUCGGGg -3'
miRNA:   3'- gGCagGUGuuuCUCCCGGUCCAGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.