miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33618 5' -55.1 NC_007605.1 + 116699 0.68 0.902932
Target:  5'- aCCG-CCACGuAGAcgcGGGCCaccguccggggaAGGUCAGu -3'
miRNA:   3'- -GGCaGGUGUuUCU---CCCGG------------UCCAGUCu -5'
33618 5' -55.1 NC_007605.1 + 143212 0.7 0.821141
Target:  5'- gCCG-CCGCAAGGAcgccGGGCCGGcUgGGAg -3'
miRNA:   3'- -GGCaGGUGUUUCU----CCCGGUCcAgUCU- -5'
33618 5' -55.1 NC_007605.1 + 58100 0.7 0.821141
Target:  5'- gCCGgggCCGCGGAGgccggggccgcGGaGGCCGGGgccgCAGAg -3'
miRNA:   3'- -GGCa--GGUGUUUC-----------UC-CCGGUCCa---GUCU- -5'
33618 5' -55.1 NC_007605.1 + 58055 0.69 0.829559
Target:  5'- gCCGgggCCGCGGAGgccGGGGCCgcggAGGcCGGGg -3'
miRNA:   3'- -GGCa--GGUGUUUC---UCCCGG----UCCaGUCU- -5'
33618 5' -55.1 NC_007605.1 + 60950 0.69 0.86139
Target:  5'- -gGUCaGCucgggggaAGGGAGGGCCAGGUCGc- -3'
miRNA:   3'- ggCAGgUG--------UUUCUCCCGGUCCAGUcu -5'
33618 5' -55.1 NC_007605.1 + 110339 0.69 0.86139
Target:  5'- gCCGUCUGCGcccccacGGGGCCacacgccgagGGGUCAGGg -3'
miRNA:   3'- -GGCAGGUGUuuc----UCCCGG----------UCCAGUCU- -5'
33618 5' -55.1 NC_007605.1 + 53077 0.68 0.883147
Target:  5'- gUGUCUGCGGAGAcguaGGCCGGGUUAa- -3'
miRNA:   3'- gGCAGGUGUUUCUc---CCGGUCCAGUcu -5'
33618 5' -55.1 NC_007605.1 + 132217 0.68 0.883147
Target:  5'- gUCGgagCCAuCAAGGGGGGCCAgugGGUgGGc -3'
miRNA:   3'- -GGCa--GGU-GUUUCUCCCGGU---CCAgUCu -5'
33618 5' -55.1 NC_007605.1 + 104664 0.68 0.889295
Target:  5'- uUCGgcgCCGCcc-GGGGGCCagucuccGGGUCAGGu -3'
miRNA:   3'- -GGCa--GGUGuuuCUCCCGG-------UCCAGUCU- -5'
33618 5' -55.1 NC_007605.1 + 40397 0.7 0.821141
Target:  5'- gCCG-CCGCAAGGAcgccGGGCCGGcUgGGAg -3'
miRNA:   3'- -GGCaGGUGUUUCU----CCCGGUCcAgUCU- -5'
33618 5' -55.1 NC_007605.1 + 95567 0.7 0.812553
Target:  5'- aUGUCUgACGA--GGGGCCAGGUaCAGGa -3'
miRNA:   3'- gGCAGG-UGUUucUCCCGGUCCA-GUCU- -5'
33618 5' -55.1 NC_007605.1 + 133108 0.71 0.729019
Target:  5'- cUCGagCugGCAGAGcgggaggccgaaAGGGCCAGGUCGGAg -3'
miRNA:   3'- -GGCagG--UGUUUC------------UCCCGGUCCAGUCU- -5'
33618 5' -55.1 NC_007605.1 + 153919 0.85 0.147831
Target:  5'- gCGUCCGgGGAGGGGGCCAGGgccugCAGGu -3'
miRNA:   3'- gGCAGGUgUUUCUCCCGGUCCa----GUCU- -5'
33618 5' -55.1 NC_007605.1 + 164333 0.75 0.518558
Target:  5'- -aGUCUGCGAuAGAGGGCCAGGUaguGGGc -3'
miRNA:   3'- ggCAGGUGUU-UCUCCCGGUCCAg--UCU- -5'
33618 5' -55.1 NC_007605.1 + 47774 0.73 0.638785
Target:  5'- uUGUCCGCu----GGGCCAGGUCAc- -3'
miRNA:   3'- gGCAGGUGuuucuCCCGGUCCAGUcu -5'
33618 5' -55.1 NC_007605.1 + 126046 0.73 0.648942
Target:  5'- gCgGUCCAgaagcCAGGGAGGGCagacggauguCAGGUCGGGc -3'
miRNA:   3'- -GgCAGGU-----GUUUCUCCCG----------GUCCAGUCU- -5'
33618 5' -55.1 NC_007605.1 + 75663 0.73 0.659087
Target:  5'- aCgGUCUgauggGgGAAGAGGGCCAGGUCc-- -3'
miRNA:   3'- -GgCAGG-----UgUUUCUCCCGGUCCAGucu -5'
33618 5' -55.1 NC_007605.1 + 23930 0.72 0.669209
Target:  5'- cCCaGUCCuacCAGAGGGGGCCAGaaccCAGAc -3'
miRNA:   3'- -GG-CAGGu--GUUUCUCCCGGUCca--GUCU- -5'
33618 5' -55.1 NC_007605.1 + 58145 0.72 0.669209
Target:  5'- gCCGgggCCGCAGAGgccGGGGCCgcagAGGcCGGAg -3'
miRNA:   3'- -GGCa--GGUGUUUC---UCCCGG----UCCaGUCU- -5'
33618 5' -55.1 NC_007605.1 + 45153 0.72 0.689357
Target:  5'- -aGUCCAaacauGGGGGCCAGGaggCAGGg -3'
miRNA:   3'- ggCAGGUguuu-CUCCCGGUCCa--GUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.