miRNA display CGI


Results 1 - 20 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33618 5' -55.1 NC_007605.1 + 161730 1.11 0.003074
Target:  5'- cCCGUCCACAAAGAGGGCCAGGUCAGAg -3'
miRNA:   3'- -GGCAGGUGUUUCUCCCGGUCCAGUCU- -5'
33618 5' -55.1 NC_007605.1 + 153919 0.85 0.147831
Target:  5'- gCGUCCGgGGAGGGGGCCAGGgccugCAGGu -3'
miRNA:   3'- gGCAGGUgUUUCUCCCGGUCCa----GUCU- -5'
33618 5' -55.1 NC_007605.1 + 105536 0.78 0.374891
Target:  5'- -gGUCCACAAAGGGGGCCcuGUCccgGGAc -3'
miRNA:   3'- ggCAGGUGUUUCUCCCGGucCAG---UCU- -5'
33618 5' -55.1 NC_007605.1 + 164333 0.75 0.518558
Target:  5'- -aGUCUGCGAuAGAGGGCCAGGUaguGGGc -3'
miRNA:   3'- ggCAGGUGUU-UCUCCCGGUCCAg--UCU- -5'
33618 5' -55.1 NC_007605.1 + 48255 0.73 0.618463
Target:  5'- aUG-CCGgGGAGAGGGCCAGGcaCAGGg -3'
miRNA:   3'- gGCaGGUgUUUCUCCCGGUCCa-GUCU- -5'
33618 5' -55.1 NC_007605.1 + 47774 0.73 0.638785
Target:  5'- uUGUCCGCu----GGGCCAGGUCAc- -3'
miRNA:   3'- gGCAGGUGuuucuCCCGGUCCAGUcu -5'
33618 5' -55.1 NC_007605.1 + 126046 0.73 0.648942
Target:  5'- gCgGUCCAgaagcCAGGGAGGGCagacggauguCAGGUCGGGc -3'
miRNA:   3'- -GgCAGGU-----GUUUCUCCCG----------GUCCAGUCU- -5'
33618 5' -55.1 NC_007605.1 + 131621 0.73 0.648942
Target:  5'- aCGcCCugGGGGAGGGaaCCGGGUgGGAg -3'
miRNA:   3'- gGCaGGugUUUCUCCC--GGUCCAgUCU- -5'
33618 5' -55.1 NC_007605.1 + 75663 0.73 0.659087
Target:  5'- aCgGUCUgauggGgGAAGAGGGCCAGGUCc-- -3'
miRNA:   3'- -GgCAGG-----UgUUUCUCCCGGUCCAGucu -5'
33618 5' -55.1 NC_007605.1 + 23930 0.72 0.669209
Target:  5'- cCCaGUCCuacCAGAGGGGGCCAGaaccCAGAc -3'
miRNA:   3'- -GG-CAGGu--GUUUCUCCCGGUCca--GUCU- -5'
33618 5' -55.1 NC_007605.1 + 58145 0.72 0.669209
Target:  5'- gCCGgggCCGCAGAGgccGGGGCCgcagAGGcCGGAg -3'
miRNA:   3'- -GGCa--GGUGUUUC---UCCCGG----UCCaGUCU- -5'
33618 5' -55.1 NC_007605.1 + 45153 0.72 0.689357
Target:  5'- -aGUCCAaacauGGGGGCCAGGaggCAGGg -3'
miRNA:   3'- ggCAGGUguuu-CUCCCGGUCCa--GUCU- -5'
33618 5' -55.1 NC_007605.1 + 133108 0.71 0.729019
Target:  5'- cUCGagCugGCAGAGcgggaggccgaaAGGGCCAGGUCGGAg -3'
miRNA:   3'- -GGCagG--UGUUUC------------UCCCGGUCCAGUCU- -5'
33618 5' -55.1 NC_007605.1 + 69097 0.71 0.76736
Target:  5'- aCCGUUCcgGCAAAGAuGGCCGGGgggaAGAg -3'
miRNA:   3'- -GGCAGG--UGUUUCUcCCGGUCCag--UCU- -5'
33618 5' -55.1 NC_007605.1 + 108244 0.7 0.785854
Target:  5'- gCCG-CC-CAAAGuccGGGaCCAGGUCAGc -3'
miRNA:   3'- -GGCaGGuGUUUCu--CCC-GGUCCAGUCu -5'
33618 5' -55.1 NC_007605.1 + 130436 0.7 0.794901
Target:  5'- uUGUCCACGggacAAGGcacaGGCCAGGUCAuGAc -3'
miRNA:   3'- gGCAGGUGU----UUCUc---CCGGUCCAGU-CU- -5'
33618 5' -55.1 NC_007605.1 + 119437 0.7 0.803804
Target:  5'- gCGcCCGCu-GGAGGGCCcGGUCGc- -3'
miRNA:   3'- gGCaGGUGuuUCUCCCGGuCCAGUcu -5'
33618 5' -55.1 NC_007605.1 + 140447 0.7 0.812553
Target:  5'- cCCGgcggcuggCCcCGAGGAGGcGCCAGGcgCGGGg -3'
miRNA:   3'- -GGCa-------GGuGUUUCUCC-CGGUCCa-GUCU- -5'
33618 5' -55.1 NC_007605.1 + 137378 0.7 0.812553
Target:  5'- cCCGgcggcuggCCcCGAGGAGGcGCCAGGcgCGGGg -3'
miRNA:   3'- -GGCa-------GGuGUUUCUCC-CGGUCCa-GUCU- -5'
33618 5' -55.1 NC_007605.1 + 95567 0.7 0.812553
Target:  5'- aUGUCUgACGA--GGGGCCAGGUaCAGGa -3'
miRNA:   3'- gGCAGG-UGUUucUCCCGGUCCA-GUCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.