Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 33619 | 5' | -52.9 | NC_007605.1 | + | 38871 | 0.77 | 0.559058 |
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Target: 5'- gCGCCGCcgCCAgGUCCUgGGGCAg- -3' miRNA: 3'- gGCGGCGuaGGUgCAGGAaCUUGUag -5' |
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| 33619 | 5' | -52.9 | NC_007605.1 | + | 38746 | 0.77 | 0.559058 |
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Target: 5'- gCGCCGCcgCCAgGUCCUgGGGCAg- -3' miRNA: 3'- gGCGGCGuaGGUgCAGGAaCUUGUag -5' |
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| 33619 | 5' | -52.9 | NC_007605.1 | + | 39745 | 0.77 | 0.559058 |
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Target: 5'- gCGCCGCcgCCAgGUCCUgGGGCAg- -3' miRNA: 3'- gGCGGCGuaGGUgCAGGAaCUUGUag -5' |
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| 33619 | 5' | -52.9 | NC_007605.1 | + | 38995 | 0.77 | 0.559058 |
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Target: 5'- gCGCCGCcgCCAgGUCCUgGGGCAg- -3' miRNA: 3'- gGCGGCGuaGGUgCAGGAaCUUGUag -5' |
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| 33619 | 5' | -52.9 | NC_007605.1 | + | 39120 | 0.77 | 0.559058 |
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Target: 5'- gCGCCGCcgCCAgGUCCUgGGGCAg- -3' miRNA: 3'- gGCGGCGuaGGUgCAGGAaCUUGUag -5' |
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| 33619 | 5' | -52.9 | NC_007605.1 | + | 39495 | 0.77 | 0.559058 |
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Target: 5'- gCGCCGCcgCCAgGUCCUgGGGCAg- -3' miRNA: 3'- gGCGGCGuaGGUgCAGGAaCUUGUag -5' |
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| 33619 | 5' | -52.9 | NC_007605.1 | + | 39245 | 0.77 | 0.559058 |
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Target: 5'- gCGCCGCcgCCAgGUCCUgGGGCAg- -3' miRNA: 3'- gGCGGCGuaGGUgCAGGAaCUUGUag -5' |
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| 33619 | 5' | -52.9 | NC_007605.1 | + | 49479 | 0.81 | 0.365296 |
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Target: 5'- gCCGCCGCAUCCGCuGggaccggggCCUUG-GCAUCa -3' miRNA: 3'- -GGCGGCGUAGGUG-Ca--------GGAACuUGUAG- -5' |
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| 33619 | 5' | -52.9 | NC_007605.1 | + | 162442 | 1.12 | 0.004329 |
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Target: 5'- aCCGCCGCAUCCACGUCCUUGAACAUCu -3' miRNA: 3'- -GGCGGCGUAGGUGCAGGAACUUGUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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