miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33619 5' -52.9 NC_007605.1 + 163658 0.67 0.975735
Target:  5'- uCCGCUGUAgaguCGUCCUUGAagGCcUCg -3'
miRNA:   3'- -GGCGGCGUagguGCAGGAACU--UGuAG- -5'
33619 5' -52.9 NC_007605.1 + 162442 1.12 0.004329
Target:  5'- aCCGCCGCAUCCACGUCCUUGAACAUCu -3'
miRNA:   3'- -GGCGGCGUAGGUGCAGGAACUUGUAG- -5'
33619 5' -52.9 NC_007605.1 + 162066 0.67 0.970282
Target:  5'- -gGCCGCGUCCAgGUCU---GGCAggUCg -3'
miRNA:   3'- ggCGGCGUAGGUgCAGGaacUUGU--AG- -5'
33619 5' -52.9 NC_007605.1 + 159708 0.68 0.95172
Target:  5'- cCCGCCGCAgaagagCCGC-UCCgUGGccccgggagccacgGCGUCa -3'
miRNA:   3'- -GGCGGCGUa-----GGUGcAGGaACU--------------UGUAG- -5'
33619 5' -52.9 NC_007605.1 + 149433 0.66 0.978168
Target:  5'- uCCGgCGUGUCCACGgagaCUcGGACGUa -3'
miRNA:   3'- -GGCgGCGUAGGUGCag--GAaCUUGUAg -5'
33619 5' -52.9 NC_007605.1 + 144148 0.68 0.948793
Target:  5'- cCCGCCuuuaggaaGCA-CCACGUCCcggGGACGg- -3'
miRNA:   3'- -GGCGG--------CGUaGGUGCAGGaa-CUUGUag -5'
33619 5' -52.9 NC_007605.1 + 136330 0.66 0.984389
Target:  5'- gCCGCCGCGggCCAgGaCCUcaucAGCGUCc -3'
miRNA:   3'- -GGCGGCGUa-GGUgCaGGAac--UUGUAG- -5'
33619 5' -52.9 NC_007605.1 + 126977 0.68 0.95294
Target:  5'- cCUG-CGCAUCCACGgCCUUGAccugguACAg- -3'
miRNA:   3'- -GGCgGCGUAGGUGCaGGAACU------UGUag -5'
33619 5' -52.9 NC_007605.1 + 122845 0.68 0.956855
Target:  5'- aCCGCCGCAgagCCGCaGUUg--GAGCAg- -3'
miRNA:   3'- -GGCGGCGUa--GGUG-CAGgaaCUUGUag -5'
33619 5' -52.9 NC_007605.1 + 118763 0.68 0.960542
Target:  5'- gCCGCCGCcgCCGacUCCUacugGGACAc- -3'
miRNA:   3'- -GGCGGCGuaGGUgcAGGAa---CUUGUag -5'
33619 5' -52.9 NC_007605.1 + 117078 0.68 0.960542
Target:  5'- uUCGCCuGCAcaUCC-CGUCCU---ACAUCa -3'
miRNA:   3'- -GGCGG-CGU--AGGuGCAGGAacuUGUAG- -5'
33619 5' -52.9 NC_007605.1 + 116699 0.66 0.982488
Target:  5'- aCCGCCacguagacGCGggCCAcCGUCCgggGAAgGUCa -3'
miRNA:   3'- -GGCGG--------CGUa-GGU-GCAGGaa-CUUgUAG- -5'
33619 5' -52.9 NC_007605.1 + 114718 0.66 0.980417
Target:  5'- -gGCagGCAUCCgGCGUCUUUGGuGCAUUg -3'
miRNA:   3'- ggCGg-CGUAGG-UGCAGGAACU-UGUAG- -5'
33619 5' -52.9 NC_007605.1 + 111076 0.68 0.938355
Target:  5'- cCCGCCGCuUUCugGUCUcgggUGAgacccucucggaggACAUCu -3'
miRNA:   3'- -GGCGGCGuAGGugCAGGa---ACU--------------UGUAG- -5'
33619 5' -52.9 NC_007605.1 + 107831 0.75 0.641066
Target:  5'- gCCGCCGCucuUCUACGUCCU----CAUCu -3'
miRNA:   3'- -GGCGGCGu--AGGUGCAGGAacuuGUAG- -5'
33619 5' -52.9 NC_007605.1 + 103079 0.68 0.955317
Target:  5'- cCCGCCGCAguugcggcagaagCCGCGUCUguaGAUAUa -3'
miRNA:   3'- -GGCGGCGUa------------GGUGCAGGaacUUGUAg -5'
33619 5' -52.9 NC_007605.1 + 101423 0.68 0.95294
Target:  5'- cCCGCCGCuggaguUCCucuagggcgGCGUCCguaGAGCGa- -3'
miRNA:   3'- -GGCGGCGu-----AGG---------UGCAGGaa-CUUGUag -5'
33619 5' -52.9 NC_007605.1 + 97742 0.66 0.984389
Target:  5'- -gGCCGCcgUCACGUCCcUGGcCGa- -3'
miRNA:   3'- ggCGGCGuaGGUGCAGGaACUuGUag -5'
33619 5' -52.9 NC_007605.1 + 97568 0.67 0.96725
Target:  5'- gCGCCGCAUcuaCCGCGUU----AACAUCu -3'
miRNA:   3'- gGCGGCGUA---GGUGCAGgaacUUGUAG- -5'
33619 5' -52.9 NC_007605.1 + 95348 0.66 0.984389
Target:  5'- -aGCCGCcgCCGCGUUUgugGGACu-- -3'
miRNA:   3'- ggCGGCGuaGGUGCAGGaa-CUUGuag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.